KEGG   Flavobacterium psychrophilum FPG101: FPG101_11880
Entry
FPG101_11880      CDS       T03281                                 
Name
(GenBank) RNA polymerase sigma54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
fpy  Flavobacterium psychrophilum FPG101
Pathway
fpy02020  Two-component system
fpy02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:fpy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    FPG101_11880
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    FPG101_11880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fpy03021]
    FPG101_11880
Transcription machinery [BR:fpy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     FPG101_11880
SSDB
Motif
Pfam: Sigma54_CBD Sigma54_DBD Sigma54_AID LacI SF3b1 MarR HTH_Crp_2 HTH_12 Crp
Other DBs
NCBI-ProteinID: AIN72478
Position
complement(2565027..2566493)
AA seq 488 aa
MLKQFLNFKLSQKLSPQQIQLMKLIQLPTQAFEARLLEEMNENPALEGGDDQEEIYEKDE
FDNNDDYDEYEDNDSIDSGDINIDEYLSNDETPDYKTQANNYSDDDDERESPLSAPVSFH
QDLINQLNTFILTDDQRNIAEFLVGSIDDMGYIRRTIQDIVDDMAFTQGIYTDEKTVEKI
LHIVHELEPSGVGARDLQECLLLQLKHKTPTESVALAMNIIQDQFEAFTKKHYDKLMLKF
SVSREQLKNGIDEIERLNPKPGGAYTGSNKITEHVVPDFAIKIIDDELELTLNGRNAPEL
HVSKDYQDMMKTYKDSKDKSNAQKDAVQFIKQKLDSAKWFIDAIKQRQETLYVTMNAIMH
FQQEYFLDGDEANLKPMILKDIADMIGLDISTVSRVANSKYVDTPYGTKLIKEFFSEAMT
NDQGEEVSTIEIKNILQTVIAEEDKNKPLPDDQLAEILKEKGYPIARRTIAKYREQLDIP
VARMRKKM
NT seq 1467 nt   +upstreamnt  +downstreamnt
atgttaaagcagtttctaaatttcaaattatctcaaaaattatctccacaacaaattcag
ttgatgaagctaattcaattgcctacccaagcttttgaagcccgtttgttagaagaaatg
aacgaaaatcctgcattagaaggcggtgatgaccaagaagaaatttacgaaaaagatgag
tttgataataatgacgattacgatgagtatgaagacaatgatagcatagattctggcgac
ataaatatagacgagtatttaagtaacgacgaaacgccagattacaaaacacaagccaat
aattatagcgatgatgatgatgaaagagaatcaccattatcggcaccagttagttttcat
caagatttaattaatcaactaaacacctttattttaacagacgatcagcgtaatattgcc
gaatttcttgtgggaagtatcgatgatatggggtatataagacgtacaatacaagatatt
gtagatgatatggcgtttacccaaggtatttataccgatgaaaaaacggtcgaaaaaata
ttgcatattgttcacgaattagaaccatctggcgtaggcgcaagagatttgcaagagtgc
ttgttgcttcaattgaagcacaaaacgcctacggaatctgttgcattagcgatgaatatt
attcaagatcagtttgaagcttttactaaaaagcattatgacaaattgatgttaaagttt
tcagtttctcgagaacaactcaaaaacggaatcgacgaaattgaaaggttaaacccaaaa
ccaggaggcgcttataccggaagcaacaaaataaccgaacacgtggttcctgattttgct
ataaaaattattgatgacgaattagaactaaccttaaacggaagaaatgcacccgaactt
catgtttcgaaagattatcaagacatgatgaaaacctataaggattctaaagacaaatcg
aacgcacagaaagatgccgttcagtttatcaaacaaaaattagattctgcaaaatggttt
atcgatgcaataaaacaacgtcaggaaacattatatgttacaatgaatgccatcatgcat
tttcaacaagagtattttcttgatggtgatgaggctaacttaaaaccaatgattcttaag
gatattgccgatatgataggattagacatttcaactgtttcccgtgtggcaaacagcaaa
tatgtagatacaccttatggtacaaagctaattaaagagttttttagtgaagccatgaca
aatgaccaaggcgaagaagtttcgactatagaaattaaaaatattcttcaaacagttatt
gcagaagaagacaagaacaagccgctaccagacgaccaattggcagaaatattaaaagaa
aaaggctatcctattgcccgaagaaccattgctaaatatcgtgaacagttagatattcct
gtggcgagaatgagaaaaaaaatgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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