KEGG   Frankia casuarinae: Francci3_3647
Entry
Francci3_3647     CDS       T00320                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fra  Frankia casuarinae
Pathway
fra03030  DNA replication
fra03410  Base excision repair
fra03420  Nucleotide excision repair
fra03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Francci3_3647
   03410 Base excision repair
    Francci3_3647
   03420 Nucleotide excision repair
    Francci3_3647
   03430 Mismatch repair
    Francci3_3647
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fra03032]
    Francci3_3647
   03400 DNA repair and recombination proteins [BR:fra03400]
    Francci3_3647
Enzymes [BR:fra01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Francci3_3647
DNA replication proteins [BR:fra03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Francci3_3647
DNA repair and recombination proteins [BR:fra03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Francci3_3647
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Francci3_3647
   MMR (mismatch excision repair)
    DNA ligase
     Francci3_3647
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Francci3_3647
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT TF_Zn_Ribbon HHH_8 zf-ribbon_3
Other DBs
NCBI-ProteinID: ABD12999
RhizoBase: Francci3_3647
UniProt: Q2J6U3
Position
complement(4355767..4357887)
AA seq 706 aa
MSATAGTADESGVASAAASADERARAASLARELDEHAYRYYVLDSPTISDAEYDRLMAEL
AALEERHPDLRTPDSPTQKVAGSYSTLFTPVEHLERMLSLENVFDDDEFHQWAARVARES
EVDAWLCELKIDGLAVDLVYEDGYLVRAATRGDGRTGEDITPNIRTLASVPVRLRGPRVP
GLLEVRGEVFFPTAKFAELNAGLVAVGGKPFANPRNAAAGSLRQKDPRVTATRPLEMIVH
GLGAQRGFEVTSQSAAYARFAELGLPVATHFEVLATVPGVLDYVHRWGDARHDVVHEIDG
VVVKVDSFALQRRLGSTSKSPRWAVAYKYPPEEVTTKLRDIRVNVGRTGRVTPFGELEPV
LVAGSTVGLATLHNIDEVGRKGVLIGDTVVLRKAGDVIPEIVGPVVDLREGSERAFVMPT
RCPECGTELVRPEGEVDIRCPNTVSCPAQLRESIFHFASRGAMDIDGLGYETATALLEAG
RVRDIGDIFHLTPESFEGLRGFAQKKIDQILRGVEAARHRPLWRLLVGLSIRHVGPTAAR
ALARELRSLEAIAATSAEDLAAVEGVGPKIAGAVLDWFADERHRDILARIAAGGARLADV
GAEEGPRPLDGVTVVITGTLTDWSRDSAKEAVEARGGKVTGSVSRKTTAVVVGADPGASK
YDKARSLRIPMLDEAGFAVLLAQGVDAASKLAVPADGPEKAETPVE
NT seq 2121 nt   +upstreamnt  +downstreamnt
gtgagcgcgacggccggtacggccgacgaatccggcgtggcttcggcggcggcttcggcg
gacgagcgggcccgcgccgccagcctcgcccgcgagctcgacgagcacgcgtaccgctac
tacgtgctcgattccccgacgatctccgatgccgagtacgaccggttgatggcggagctc
gccgcgctggaggagcggcatcccgacctgcgcacaccggactcgccgacgcagaaggtg
gccggctcctactcgaccctgttcaccccggtcgagcatctcgaacggatgctgtccctg
gaaaacgtcttcgacgacgacgagttccaccagtgggcggcgcgcgtggcccgggaaagc
gaggtcgacgcctggctctgcgagctgaagatcgacgggcttgccgtggacctcgtctac
gaggatggttacctggtgcgtgccgcgacgcgcggcgacggccggacgggggaggacatc
acccccaacatccgcaccctggcgagcgtgccggtacggctgcgcgggccgcgggtgccc
gggctgctggaggtgcggggcgaggtcttcttcccgaccgcgaagttcgccgagctcaac
gccgggctggtggccgtggggggcaaaccgttcgcgaacccgcgtaacgccgcggccgga
tccctgcggcagaaggatccccgggtcaccgccacccggccgctggagatgattgtccat
ggcctgggcgcgcagcgcggcttcgaggtcacgtcccagtcggcggcctatgcccgcttc
gcggagctcgggctgcccgtcgccacccacttcgaggtcctggcgacggtgcccggcgtg
ctcgactacgtgcaccggtggggcgacgcgcgccacgacgtggtgcacgagatcgacgga
gtggtcgtcaaggtcgactcgttcgccctgcaacgccggttgggctccacctcgaagtcc
ccccgctgggcggtggcctacaagtatccgccggaggaggtcacgaccaagctgcgcgat
atccgggtgaacgtgggccgcaccggccgggtgacccccttcggggagctggagccggtc
ctggtcgccgggtccacggtgggcctcgcgaccctgcacaacatcgacgaggtcggtcgc
aagggggtgctcatcggggacacggtcgtcctgcgcaaggccggggacgtcatcccggag
atcgtcggcccggtcgtcgacctgcgagagggttccgagcgggccttcgtgatgcccacg
cgctgcccggagtgcggcaccgagttggtgcggcccgagggcgaggtcgacatccgttgc
ccgaacaccgtctcctgtcccgcgcagttgcgggagtcgatcttccatttcgcatcccgg
ggggcgatggacatcgacgggctcgggtacgagacggcgaccgccctgctcgaggcgggc
cgggtgcgtgacatcggcgacatcttccacctgacgcccgagtccttcgaggggctgcgc
gggttcgcgcagaagaaaatcgaccagattctgcggggggtcgaggccgcgcggcaccgg
ccgctttggcggctgctggtcggcctgtcgatccgccacgtcgggcccacggcggcgcgg
gcgctggcccgggaactgcggtcgctggaagcgatcgccgccacgtcggccgaggacctc
gccgcggtcgaaggggtcggtccgaagatcgccggcgcggtgctcgactggttcgccgat
gaacggcaccgcgacatcctcgccaggatcgccgccggcggggcacggctcgccgacgtc
ggcgcggaggagggcccacgtcccctcgacggcgtcaccgtcgtcatcaccggcacgctc
accgactggagccgcgactcggccaaggaggcggtcgaggcgcgcggcggcaaggtcacc
ggctcggtgagcaggaagaccaccgccgtcgtcgtcggcgcggatccgggggcctcgaag
tacgacaaggcgcgcagtctcaggatccccatgctggacgaggccggattcgccgttctg
ctggcgcagggggtcgacgcggccagcaagctcgccgttcccgccgacggtcccgagaag
gccgagaccccggtggaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (11)   
   Pfam (11)   
All databases (42)   

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