KEGG   Francisella frigiditurris: KX01_671
Entry
KX01_671          CDS       T05636                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
frc  Francisella frigiditurris
Pathway
frc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:frc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    KX01_671 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:frc03021]
    KX01_671 (rpoC)
   03400 DNA repair and recombination proteins [BR:frc03400]
    KX01_671 (rpoC)
Enzymes [BR:frc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     KX01_671 (rpoC)
Transcription machinery [BR:frc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     KX01_671 (rpoC)
DNA repair and recombination proteins [BR:frc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      KX01_671 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid
Other DBs
NCBI-ProteinID: APC97063
UniProt: A0A1J0KTQ5
Position
662752..667008
AA seq 1418 aa
MSNGILNQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPVKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLERKQLLTDEEYAEALENYGYEFEASMGA
EAIYALLSETDMDSEIEALQAEYEESKSTARREKAVKRLRLMETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQES
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLK
LHQCGLPKKMALELFKPFVYSKLRLGGYATTIKQAKRMVELEESVVWDILETVIREHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLESRV
LMMSTNNILSPASGQPVITPTQDIVLGLYYITREKEGSKGEGKLFSSYEDVSRAYNSGTV
DIHAKIKFRVNRQVFDTKGNTYSEKGIVDTTVGRALLINILPDGLSFSLINRVLVKKEIG
NIINQSFRILGGKATVLLADHLMYAGFKYSTISGVSVGVDDMVIPTDKEEKIEKAEKEVK
HITEQYQSSLVTENERYNNIVHIWSKTSDEVGASMMEAISKEKALVDGKEKEIESFNSVY
MMAKSGARGSYDQMRQLAGMRGLMSKPDGTTIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVIIEEDCGTDDGLMFSAIVEDGEVKVPLAERALGRV
LAADVYNNKNEVLLEAGTLLDENLVELLDENGIDMIKLRSPITCNTRRGLCAKCYGRDLA
RERQVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGVTASDIKVKTSGSVKFDNIR
TVTNKEAKQVVVSRAGELIVSDSMGRTREKHKVHMGAILPLTDGSEVHIGDVIASWDPHA
QPIITDVAGTVILEDVIDGITSRHKSDDLTGQLTIEITSVSQRATTKHMKPVVKILDSKG
KELKIINLAVGAVLNVADGSKIEIGDIVAKIPLEGSKNKDITGGLPRVAELFEARRPKEA
AILAPCDGVVKLGNRDTKEKQRIEIFDKDGILIDEILLPKSRHLNVFDGETISKGDVLVD
GPTDPHELLKLKGLEEFADYILFEAQSVYRMQGVVINDKHIETVVRQMLRKAIVLDEGDS
KFVKDEAVELVRILEENDKLAAEGKRLIEFDPVLMGITRASLSTESFLSAASFQETTRVL
TESSINGQVDNLRGLKENVLIGRLIPTGTGLAIRKETAKIEKLREDLGVDDSAIFDNIAS
EFASQENGIESFGDVNDDSNVNDDIEESLRNALESLDF
NT seq 4257 nt   +upstreamnt  +downstreamnt
ttgagtaacggtatcctgaatcagaattacaatagcaaaaaatttgacataatcaaaatt
tctttggcatcgcctgaagttattcgttcatggtcacatggtgaggttaaaaaacctgaa
accataaattatagaacttttaagccagagagagatggtcttttttgtgctaaaattttt
ggccctgtaaaagattatgagtgtctatgtggtaaatataaaagacttaagcatcgtggt
gttgtctgtgaaagatgtggtgttgaagtagagcaagctaaagtaagaagagaaagaatg
gggcatattgatttagtttgtcccgttgttcatatatggtatctaaaatcattaccttct
agaattggcttgtttttagatatgccgcttaaaaatgtagagaaagttctatattttgaa
tcatatatagtaacagaccctggtatgacacctttagaaagaaaacaacttcttacggat
gaagagtatgcggaagcattagaaaactacggttatgagtttgaagcttctatgggtgct
gaagctatttatgctcttctttctgaaactgatatggattcagaaattgaagctcttcag
gcagagtatgaagaaagtaagtcaacagcgagaagagagaaggctgtaaaaagattaaga
cttatggagactttccaagcttctggtaataaacctgagtggatggttatgactgtattg
ccagttcttccaccagacttaagacctcttgtgcctattgaaggtggtagatttgcaaca
tctgatttaaatgatttatatcgtagagtaattaatagaaataataggcttaaaaaatta
ttagatctaaatgctcctgatattatagttcgaaatgaaaaaagaatgcttcaggaatct
gtagatgctcttttagataatggtagaagaggaagagctgtaactggttctaataagaga
cctcttaaatcattagcagatatgattaaaggtaagcaaggtcgtttccgtcaaaattta
ttaggtaaacgtgttgactattcgggtcgttctgtaattactgttggaccttctttaaaa
ttacatcagtgtggtttgcctaagaagatggctttagaattatttaaaccatttgtttat
tctaagttaagacttggtggctatgctacaactattaagcaagctaaaagaatggtagag
ttagaagagtcagtagtatgggatattctagaaactgttattagagagcatccagttctt
cttaacagagctcctacattacacagattaggtattcaagcttttgaacctaaacttatt
gaaggtaaagctattcaattgcatccattagtttgtgcggcgttcaacgctgactttgat
ggtgaccaaatggctgtacatgttcctttaactgtggaatctcagcttgaatctagagtt
cttatgatgtctacaaataacatcttgtctccagcaagtggacagcctgttattactcct
actcaggatatagtgcttggactttattatataactagagaaaaagaaggctctaaaggc
gaaggcaaattgttttctagctatgaagatgttagtagagcgtataattcaggaactgta
gatattcatgcaaaaattaaatttagagtgaatagacaagtatttgacactaagggtaat
acttatagtgaaaaaggaatagttgatactactgtaggtagagcattgttaatcaatatt
ttaccagacggtttatctttttctctaatcaatagagtgcttgttaaaaaagaaatcggt
aatattataaaccaaagctttagaatccttggtggtaaggcaacagtccttttggctgac
catttaatgtacgctggttttaaatattctacaatttctggtgtatctgttggtgttgat
gacatggttattccaacagataaagaagaaaaaattgaaaaagctgaaaaagaagtcaag
catataacagaacagtatcagtcttcattagttactgaaaatgaaagatataataatata
gttcatatatggagtaaaacttctgatgaggttggtgcttcaatgatggaagctatttct
aaagaaaaagctttagttgatggtaaagaaaaagaaatagaatctttcaactcagtttat
atgatggcgaagtctggtgctagaggatcttatgaccaaatgagacagcttgctggtatg
aggggtctaatgtcaaaaccagatggtacaactattgagacagctattacagctaacttt
agagaaggattatcggttcttcaatactttacatctacgcatggtgctcgtaaaggttta
gcagatacggctcttaaaacagctaatgctggttatttaactcgtaggcttgtagatgtt
gcacaagatttagtaattattgaagaagattgtggaacggatgatggcttaatgttctca
gcaatagttgaagatggtgaggttaaagttccactagcagaaagagctttaggaagagtt
ttggctgctgatgtttataataataagaatgaagttttattagaagctggtactttactt
gatgaaaatctggttgagttgcttgatgaaaacggcattgatatgatcaaactacgttca
ccaattacttgtaatactcgtagaggactatgtgctaaatgttatggaagagacttggct
cgtgaaagacaagttaacgttggtgagtctgtaggagttattgctgctcaatctattggt
gagccaggtactcagcttacaatgagaacattccatactggtggtgcggcatctctagga
gtaacagctagtgatattaaagttaaaactagtggttcagttaagtttgataacataaga
acggtaactaataaagaagctaagcaagttgtagtatctcgtgcaggagaattaatagtt
tctgatagcatgggaagaactagagaaaaacataaagtacatatgggagcaatattacca
ttaactgatggtagtgaggttcatattggtgatgttatagcgtcttgggatcctcatgcg
caaccaataattactgatgttgctggtacagttatattagaagatgttattgatggtatc
acatcaagacataagtccgatgatttaacaggtcagcttacaattgagataacttcagtt
tctcaaagagcaactactaagcatatgaaaccagtagttaaaatattagattccaaagga
aaagagctaaaaatcattaacttggcagttggtgcagtacttaacgttgctgatggttca
aaaattgagattggagatattgttgctaagattcctttagaaggttctaagaataaagat
attacaggaggtcttcctagggttgcagagctgtttgaagctagaagacctaaagaggct
gctatactagctccttgtgacggtgtagttaagttaggtaatagagatacaaaagaaaaa
caaagaatcgaaatttttgataaagatggaatcttgatagatgaaattttgttgccaaaa
tcaagacatttgaatgtatttgatggggaaactatatctaaaggagatgttttagttgac
ggtccaacggatcctcatgagttacttaagcttaaaggattagaggaatttgctgattat
atattatttgaagctcagtctgtttatcgtatgcaaggtgttgttattaacgataagcat
atagaaaccgtagtaagacagatgttgagaaaagcaatagttcttgatgagggagatagt
aaattcgttaaagatgaagctgttgaattagtgagaatattagaagaaaatgataagtta
gcagctgaaggaaagaggttgatagagtttgatcctgtgttaatgggtattactagagct
tctttatctacggaatcattcttatctgcagcatcattccaggaaactacaagagttctt
actgaatcctctataaatggtcaggtagataatttaagaggcttaaaggagaatgtatta
ataggcagattgattccaacaggtacaggtttggcaattagaaaagaaacagctaaaatt
gagaaactgagagaagatctaggcgtagatgattcagctatctttgataatattgcttct
gaatttgcgtctcaggaaaatggcattgagagttttggtgatgttaatgacgatagcaat
gtgaatgatgatattgaagaatcgttaagaaatgctcttgaatctttagacttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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