KEGG   Frankia sp. EAN1pec: Franean1_1082
Entry
Franean1_1082     CDS       T00608                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fre  Frankia sp. EAN1pec
Pathway
fre03030  DNA replication
fre03410  Base excision repair
fre03420  Nucleotide excision repair
fre03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Franean1_1082
   03410 Base excision repair
    Franean1_1082
   03420 Nucleotide excision repair
    Franean1_1082
   03430 Mismatch repair
    Franean1_1082
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fre03032]
    Franean1_1082
   03400 DNA repair and recombination proteins [BR:fre03400]
    Franean1_1082
Enzymes [BR:fre01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Franean1_1082
DNA replication proteins [BR:fre03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Franean1_1082
DNA repair and recombination proteins [BR:fre03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Franean1_1082
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Franean1_1082
   MMR (mismatch excision repair)
    DNA ligase
     Franean1_1082
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Franean1_1082
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 DNA_ligase_ZBD BRCT PTCB-BRCT HHH Auto_anti-p27 HHH_8 HHH_3 TF_Zn_Ribbon
Other DBs
NCBI-ProteinID: ABW10538
RhizoBase: Franean1_1082
UniProt: A8L538
Position
1288647..1290758
AA seq 703 aa
MSVDERGLAADERGLAADEVGLAADERGRAAELARELEEHAYRYYVLDKPTVADAEYDAL
MRELEAIEERHPELRTPDSPTQKVAGSYSTLFTPVEHLERLLSLDNVFTDEEFHAWAARA
AREQPVTAWLCELKIDGLAVDLVYEGGRLVRAATRGDGRTGEDITPNVRTLASVPSRLRG
PAVPELLEVRGEVFFPTERFTELNAALVEAGKAPFANPRNAAAGSLRQKDPRVTASRPLD
MIVHGLGAHQGFDVASQSGAYARLAELGLPVSARHEVLASVEDVLAFVRRWGEHRHDVEH
EIDGVVVKVDDFGQQRRLGATSKAPRWAVAFKYPPEEVTTRLRDIQVNVGRTGRVTPFGV
LEPVKVAGSTVAMATLHNIDEVGRKGVLIGDTVVLRKAGDVIPEIVSPVVDLRDGSERAF
VMPTHCPECGTQLVRPEGEVDIRCPNTVSCPAQLRESVFHLASRGALDIDGLGYETATVL
LAEGRIHDIGDVFHLAPESFEGLRGFADKKIEQILRGLEAARDRPLWRLLVGLSIRHVGP
TAARGLARELRSLDAIATAPAERLAAVDGVGPKIADAVVDWFADPRHRDIVARIASGGVR
LADEGAGEGPGPLDGVVVVITGTLDGWSRDTATEAVQSRGGKVTGSVSKKTTFVVAGADP
GASKYDKARTLKIPLLDEAGFAVLLRDGADAARALAVPEEVDG
NT seq 2112 nt   +upstreamnt  +downstreamnt
gtgagcgtggacgagcgcggcctggctgccgacgagcgcggcctggccgctgacgaggtt
ggtctggccgccgacgagcgtggccgggccgccgagctggcccgcgagctggaggaacac
gcctaccgctactacgtgctcgacaagccgaccgtcgccgatgccgagtacgacgcgctt
atgcgcgagctggaggcgatcgaggagcggcaccccgagctgcgcaccccggactcgccg
acccagaaggtcgcaggctcctactcgacgctgttcaccccggtcgagcatctggaacgg
ctgctgtcactcgacaacgtcttcaccgacgaggagttccacgcctgggcggcgcgcgcc
gcgcgggagcagcctgtcacggcgtggctgtgcgagctgaagatcgacgggctggcggtc
gacctcgtctacgagggcggccggctcgtccgcgcggccacccgcggcgacggtcgcacg
ggggaggacatcacgcccaacgtgcggaccctggcgagcgtgccgtcccggctgcgcggc
ccggccgtgccggagctgctcgaggtgcgcggcgaggtgttcttcccgaccgagcggttc
accgagctcaacgccgcgctggttgaggcggggaaggcaccgttcgccaacccgcgcaac
gccgccgccgggtcgctgcgccagaaggacccccgggtcaccgccagccgtccgctcgac
atgatcgtgcacggcctcggcgcccaccagggcttcgacgtggcgtcccagtcgggcgcg
tacgcgcggctcgccgagctggggctgccggtctccgcccgtcacgaggtgctggcctcg
gtggaggacgtgctcgccttcgtccggcgctggggcgagcaccgccacgacgtcgagcac
gagatcgacggggtcgtcgtgaaggtcgacgacttcggccagcagcgtcgcctcggcgcc
acctcgaaggccccccgctgggcggtcgcgttcaagtacccgccggaggaggtcaccacc
cggctgcgcgacatccaggtgaacgtcggccgcaccggccgggtgaccccgttcggggtg
ctcgagccggtgaaggtggcggggtcgacggtggcgatggccaccctccacaacatcgac
gaggtgggtcgcaaaggcgtcctgatcggcgacaccgtggtgctgcgcaaggccggcgac
gtcatccccgagatcgtcagcccggtcgtcgacctgcgtgacggttccgagcgcgcgttc
gtgatgcccacgcactgcccggagtgcggcacccagctggtccgccccgagggcgaggtc
gacatccgctgcccgaacaccgtctcgtgcccggcgcagctgcgggagtcggtgttccac
ctggcatcgcgcggcgcgctcgacatcgacgggctcggttacgagacggcgacggtcctg
ctcgcggagggccggatccacgacatcggcgacgtcttccacctggccccggagtccttc
gaggggctgcgtggcttcgccgacaagaagatcgagcagatcctgcgcggcctggaggcg
gctcgcgaccgcccgctgtggcggttgctggtcgggctgtcgatccgtcacgtcgggccg
acggccgcccgcgggctggcccgggagctgcgttccctcgacgcgatcgcgacggcgccc
gccgagcggctcgcggccgtcgacggcgtcgggccgaagatcgccgacgcggtggtcgac
tggttcgccgacccgcggcaccgcgacatcgtcgcccggatcgcctcgggcggggtccgc
ctggccgacgagggcgccggcgagggccccgggccgctggacggcgtcgtggtggtcatc
accggcaccctggacggctggagtcgggacacggcgaccgaggcggtgcagtcccgcggc
ggcaaggtgacgggctcggtgagcaagaagacgacgttcgtcgtcgccggcgccgatccc
ggggcgtcgaagtacgacaaggcccgcaccctgaagatcccgctcctggacgaagccgga
ttcgcggtgcttctccgtgacggagcggatgcggccagggcactcgccgtgcccgaggag
gtcgacgggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (12)   
   Pfam (12)   
All databases (34)   

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