KEGG   Frankia sp. EAN1pec: Franean1_5262
Entry
Franean1_5262     CDS       T00608                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
fre  Frankia sp. EAN1pec
Pathway
fre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Franean1_5262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fre03019]
    Franean1_5262
   03009 Ribosome biogenesis [BR:fre03009]
    Franean1_5262
Enzymes [BR:fre01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Franean1_5262
Messenger RNA biogenesis [BR:fre03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Franean1_5262
Ribosome biogenesis [BR:fre03009]
 Prokaryotic type
  rRNA processing factors
   Franean1_5262
SSDB
Motif
Pfam: RNase_E_G
Other DBs
NCBI-ProteinID: ABW14620
RhizoBase: Franean1_5262
UniProt: A8L1W0
Position
complement(6325145..6329428)
AA seq 1427 aa
MPEDQIIEDQATRSEVTPSETVPSDNTLADTAAPATAAPEPVTPATAVAESAAPESVTAE
TAPQRPTRRRRAAGRPAGPPPEEAGPPAAAADGETAVDAADSATGAGAGAVSSTLPVSDG
AAPDAAVPLVEAGAEPAPEAAPAKPARRARTTRPRRASREVSEAVPDTTATPAPSDTTSP
AAGSSDTTSLDTRAPETTSSATAAPEAGADNVPGSPGQVAKGDVTASDALADTTASGEAA
PAVTKPRRTRARRAATKVEPAAETGTPTGAPGSESAASASSSVGEPAVGQTPAASAPAPA
AAPDSVADAATPPAVAATSQVVAATSPAPEPAIDETVDPLAEPVDELPADATADADAGTS
AAGTGAAATDAPGAQPAVASSPEPVIAATVADTAAVTGAGTTGTTEATPAAGPEAVAGTE
TAPGPEAVGAPEPPRAERTSRRRTRAVAPTWTSGAEAPAPAPVTRQSARRPVAMITFQQP
EPAVVDPWPRRRRDADDAPAEPAVTGRGGLTGAGLDDVAPADEIVDAADDAVAYDTAEFG
EALETESSEQAFDGGEYSSTDADGDDAGPGGTRRRRRGRRGRGRARGEDEISETSDLAEE
QVDEAEERDDRELEAEPVEREPRSSRRRSRRSPTRETFDEAEEIDSEAELVAGADSGADT
DTDTESDADDGADLEDGADDSAEDGSDDDRAGGSRRRRRRRRRSGTGAETTPVPDDPPNT
VVHVRETRRDDDLVRGVSGSTRLEAKRQRRREGRDSGRRRAPIVTEAEFLARRESVERRM
IVRHNGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIGKGRN
AVLYAGEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLV
YVPDGQNAGISRKLPDTERARLKSILKKITPENGGVIVRTAAEGASEAELERDIERLVAQ
WEDIQRKAQKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAATVEGYVDTVAPD
LRDRVRRYVGTGDVFAEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTG
KGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRD
RTRHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCNGRGVLVHLDSAHSRDAQSRDGA
QPREAASSASQPAAEAPAQAAGTSTGRRARHATKPAGPALVAAAVSSAVDGAHVSSDDAS
GSVNGSASAESTDSSGSVGSAGVSGPAEAVALGEHPAAQAGASLLDAVAPRAARIAVTVG
AGSDQGTESNGVDSNGVSGGPGANGTGSGGAEGTTVDGESRPGSGGIPVFANTDDPDSVL
HSGTNGAGTPAGAEKPARARRRRASRPVSKPTDTAQPIPVPSEATST
NT seq 4284 nt   +upstreamnt  +downstreamnt
gtgcccgaagatcagatcatcgaggaccaggccacgcgctccgaggtaacgccctccgag
accgtgccctccgacaacacccttgccgataccgcggcccctgcgacggcggctcccgag
ccggtgactcccgcgacagctgtcgctgagtctgcggcccctgagagcgtgaccgccgag
accgctccgcaacgccccacccggcgccgccgcgcggccggcagaccggccgggccgcca
cctgaggaggcaggcccgcctgccgccgcggccgatggcgagaccgccgtggacgcggcc
gattccgccactggcgccggtgccggtgccgtgtccagcactctccccgtgtccgacggt
gcggcgcctgacgccgcggtaccgctggtcgaggccggcgccgagccggcgcccgaagcc
gcgccggccaagccagcccggcgggcgaggacgacccggccgcgccgggcctcccgggag
gtcagcgaggccgtacccgacaccacagccacccccgctccctccgacaccacgtcgccc
gccgccggctcgtccgacacgacgtcgctcgacaccagggcacctgagaccacgtcgtcc
gccaccgcggcgcccgaggccggagcggacaacgtccccggctcgcccgggcaggtcgcg
aagggcgacgtcaccgcgtccgatgcgctcgctgacactacggcgtcgggcgaggctgcc
cccgccgtgaccaagccgcgtcgcacccgtgctcgtcgggcggccacgaaggtcgagccg
gcggccgagaccggcactcccacgggtgcgccgggcagcgaatccgccgcctcggcgtcg
tccagcgtgggcgagccggcggtcgggcagactcccgccgcctccgctccggcccccgcc
gcagccccggactcggtggccgacgcggccaccccgccggctgtcgcggccacctcgcag
gtggtagcggccacctcgccggctcccgagccggccatcgacgagaccgtcgacccgctc
gcggagccggtcgacgaactgccggcggacgccaccgccgacgcggacgccgggaccagc
gctgccgggactggcgccgccgcgacggacgcgcccggggctcagccggcggtcgcgtcc
tcgccggagcccgtgattgccgcgacggtggcggacacagcggctgtgacgggcgccgga
accaccggaaccaccgaagccacccccgcggccggtcccgaggcggtcgccggaacggag
accgcccccggtcccgaggcggtcggtgcgcccgagcccccgcgggcggagcgcacctcg
cggcggcgcacgcgggcggtcgccccgacgtggaccagcggcgccgaggcccccgccccc
gcgccggtgacccggcagtcggcccgtcgcccggtggcgatgatcaccttccagcagccg
gagccggcggtcgtggacccgtggccccgccgccgtcgtgacgctgacgacgcgccggcc
gagcccgccgtgaccggtcgcggcggcctcaccggtgcgggcctcgacgacgtggccccg
gccgacgagatcgtcgacgcggccgacgacgcggtggcgtacgacaccgcggagttcggt
gaggcactggagacggagagcagcgagcaggcgttcgacggcggcgagtactcgtccacc
gacgcggacggcgacgacgccggaccgggcggaacccgccgccgccgccgcggccgccgt
ggtcgtggccgggcccgcggcgaagacgagatctccgagaccagtgaccttgccgaggag
caggtcgacgaggccgaggagcgcgacgaccgcgagctcgaagccgagccggtggagcgt
gagcccaggtcctcccgccgccgctcacgtcgctcgccgacgagggagacattcgacgag
gcggaggagattgactccgaagccgagctggtggccggagccgactccggagccgacacc
gacaccgacaccgagtctgacgccgacgacggcgcggacctcgaggacggcgcggacgac
tcggccgaggacggttcggacgatgaccgcgccggtggatctcgccgccgccgccggcgc
cgccgccgttccgggaccggcgcggagaccacgccggtccccgacgaccccccgaacacc
gtcgtgcacgtgcgcgagacgcgccgggacgacgacctcgtccgcggggtcagcggttcc
acccggctggaggcgaagcgccagcgccggcgcgagggccgcgacagcggtcgccgccgc
gcacccatcgtcaccgaggccgagttcctcgcccggcgggagtcggtcgagcgccggatg
atcgtccggcacaacggtgaccgcacccagatcgccgtgcttgaggacggcgtcctggtc
gagcacttcgtgacgcgcgccagctcggcgtcctacgcgggcaacgtgtacctcgggcgg
gtgcagaacgtcctggccagcatggaggcggcgttcgtcgacatcggcaagggccgcaac
gccgtcctgtacgccggtgaggtcaactacgacgcctcgggcctcgacggccggccgcgc
aagatcgagcaggtgctgaagtccgggcagtcggtgctcgtccaggtctcgaaggacccg
atcgggcacaagggcgcgcggctgaccagccaggtgagcctgcccggccgctacctcgtg
tacgtgccggacggccagaacgccggaatcagccgcaagctgccggacaccgagcgcgcc
aggctgaagagcatcctcaagaagatcactccggagaacggtggggtgatcgtccgcacc
gcggcggagggtgcgagcgaggccgagctcgagcgcgacatcgagcgcctcgtcgcgcag
tgggaggacatccagcgcaaggcgcagaaggccagcgcgccgtccctgctctacggcgag
cccgacctggtggtgcgggtcatccgcgacatcttcaacgaggacttcaccgagctggtc
gtccaggggtcgcacgaggccgcgaccgtcgagggctacgtcgacacggtcgccccggac
ctgcgcgaccgcgtccgccgctacgtcggcaccggggacgtcttcgccgagcaccgggtg
gacgagcagctcgcgaaggcgctggaccgcaaggtctggctgccctccggcggctcactg
gtcatcgaccgcaccgaggcgatgaccgtcatcgacgtcaacaccggcaagttcaccggc
aagggcggcaacctcgaggagacggtcaccaagaacaacctcgaggccgcggaggagatc
gtccgccagctccggctgcgcgacatcggtggcatcatcgtcatcgacttcatcgacatg
gtgctggagagcaaccgcgagctggtgctgcgccggctcaccgagtgcctcggccgggac
cggacccgccaccaggtcgccgaggtgacgagcctgggcctcgtccagatgacccgcaag
cgggtgggccagggcctgctggaggcctacagcgagccgtgcgcccactgcaacgggcgc
ggtgtgctcgtccacctcgactccgcgcactcaagggacgcgcagtcgcgggacggggca
cagccgagggaggcggcgtcgtcggcgagccagccggcggcggaggctccggcccaggcg
gccggtacctccacgggccgccgcgcacggcacgcgacaaagcccgctggtccagccctc
gtggctgccgcggtctcgtcggccgtggacggggcgcatgtctcctcggacgatgccagc
gggtccgtgaacggctccgcatcggctgaatcgactgattcgtctggatcagttggatcg
gctggggtgtcggggccggcggaggcggtggctcttggtgaacacccggccgctcaggcc
ggcgcgtccttgctggacgccgtcgcaccgcgggccgcccggatcgccgtaacggttgga
gccggaagcgatcagggcactgagagtaacggcgtcgacagcaacggcgtcagtggcggg
cccggggctaacgggaccgggagtggcggggccgagggcaccacggtcgacggtgagtcg
cggccgggttccggcggaatcccggtgttcgcgaacaccgacgatccggacagcgttctg
cattccggtacgaacggtgcgggcactccggctggcgccgagaagccggcccgcgcccgt
cgccgtcgcgcatcccgcccggtctccaagcccacggacaccgcccagccgatccccgtt
ccctccgaagccaccagcacctga

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