KEGG   Francisella sp. FSC1006: LO80_02820
Entry
LO80_02820        CDS       T03403                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
frf  Francisella sp. FSC1006
Pathway
frf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:frf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LO80_02820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:frf03019]
    LO80_02820
   03009 Ribosome biogenesis [BR:frf03009]
    LO80_02820
Enzymes [BR:frf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     LO80_02820
Messenger RNA biogenesis [BR:frf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LO80_02820
Ribosome biogenesis [BR:frf03009]
 Prokaryotic type
  rRNA processing factors
   LO80_02820
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP Flu_C_NS1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: AIT09014
UniProt: A0A097EN73
Position
580970..583627
AA seq 885 aa
MKKILINSNSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGDNIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPDGGGISRRVEGEDRDRLKKYLKDLNIPKNMSVIARTACVECSFEELKHD
FDNLVELWKSISQTYHKIKKPALLHKESDIIIRTVRDHLREDVKEIIVDSKECFDDVKRQ
LGLLRQSFDINKVKLYSEDLPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAVD
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MDALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAMKDDTNEIRVQVPVDIAAYILNEKRDNIVDIEKITNVKVMLIPNFNMESPKF
QMQRIWGTSYKSNRTSTDLIEDVYNVEVPKAGKKKVAAVDLVKNTEKKQNSNKDSKPAEQ
KQEQKTNKPVNNTTKDQQPKLAEPKKKGFFAKLAGVFSAKAEEKVEEAPVKQQPKQHNNK
NNNSQKPQHNKQNRENNNQRNDRNNNDRNNNDRGDRNNKGQNSQRPQHNKQNRENNNQRN
DRNNNDRNNNDRGDRNKNKRSNDKFDKKSNNRNGRSNNLNLNNAEEVVDITKVKYQNQNT
ATTVDNIKKVISKNPEEFVSVMVKDVLENYDSLKDDGAKKVATEEKAKTHKYLRFETVSV
DTAITSAQEASKPKKVEEVASAVKEEAKTPKANQEAEKAPKQKENKKPAKDKDTKKDSVK
SKPKKDKQTSTAKSDKKEAPAKDTKTQAEYINYSPAVDFESQALV
NT seq 2658 nt   +upstreamnt  +downstreamnt
atgaaaaaaatactaatcaatagtaacagtagcgaagaaactagaattgctacgcttgat
aatggaaaactaatagatttagatattgaaaatgtcgatagagagcaaaaaaaagctaat
atatacaaaggatatatttcaagaattgagcctagtttaaatgcaatatttgtaaactat
ggtgaagaaaaaaatggtttcttaccttttaaagaagtatctgaatattacctaaaagat
gtaccaaatggagacaatattgcccctttgctttccgaaggacaagagttaatcgttcaa
atagacaaagaagaacgcggtgacaaaggagccgctcttactacatttattactctagct
ggctcttacatggttctattaccaaacaatcctgatggtggcggtatttctcgtcgtgtt
gaaggtgaagatagagatagacttaaaaaatatcttaaagatctaaacatccctaaaaat
atgagcgtaattgctagaacagcttgtgttgagtgttcttttgaagaactaaagcatgac
tttgataatcttgttgaattatggaaatcaatttctcaaacttatcacaaaatcaaaaaa
cctgctctattacataaagaaagcgatattataatcagaacagtaagagaccacttaaga
gaagatgtcaaagaaatcattgtagattcaaaagagtgctttgatgatgtgaaaagacaa
cttggtttattaagacagagctttgacatcaacaaggttaaactttacagtgaagattta
ccaatctttgcacaatttggtattgatcaacagatcgaaaatgcttataaaagagaaatt
cgtctaccatctggtggctctatagtaatcgacactacagaagcattagtcgctgttgat
gtaaactcatctcgtgcaaataaagcagaagatgttgaaactacagctttcaaaacgaac
ttagaagctgctgaagaagtagctcgccaacttagaattagagacttaggtggtcttgtt
attgttgactttatcgacatgtctttctatccaaatagaaaacaagttgaagaaaaatta
atggacgctcttcaacaagacaaagctcgtatccaaatgtctcgcatctctaaacttggt
ttagttgagatttctagacagcgtctaagctcatcaataaacgaaagtgtcatgcagaaa
tgtcctcgttgtgaaggtcatggtttcattaaaacaactcaagctacagctcttactata
ctacgtaaaattagagccgaagctatgaaagatgatactaatgaaatcagagttcaagtt
cctgtggatatagctgcatatatactaaatgaaaaaagagataatattgttgatattgaa
aaaatcactaatgttaaagtaatgcttatccctaatttcaatatggaatctccaaaattc
caaatgcaaagaatctggggtactagctataaatcaaatcgtacaagtactgatttaatt
gaagatgtatacaatgttgaagttccaaaagcaggtaagaaaaaggtagctgctgttgat
ttagtaaaaaacactgaaaaaaagcaaaattctaacaaagattctaaaccagcagaacaa
aaacaggagcaaaaaacaaataagcctgtaaataatacaacaaaagatcaacaacctaag
ttagcagaacctaagaaaaaaggtttctttgctaaactagctggtgtgttctccgctaaa
gcagaagaaaaagttgaagaagctcctgtaaaacagcaacctaaacagcataacaataaa
aataataactctcaaaaacctcagcataacaagcagaacagagagaacaataatcaacgc
aatgatcgcaacaataacgatagaaataacaatgacagaggcgatcgtaataacaaaggg
caaaactcccaaagacctcaacataacaaacaaaatagagagaataataatcaacgcaat
gatcgcaacaataatgatagaaataacaatgacagaggcgatcgtaataagaataaaaga
agtaatgacaaatttgataaaaaatcaaataatcgtaacggcagaagcaacaacttaaat
ttaaataatgctgaggaagttgtagatattacaaaagtaaaatatcagaatcaaaacact
gctactacagtagataacattaaaaaagttatctctaaaaacccagaagaatttgtttct
gtaatggttaaagatgttttagaaaattatgatagcttaaaggacgatggtgctaaaaaa
gtagcgactgaagagaaggcaaaaactcataaatatcttaggtttgaaacagtatctgtt
gatactgctataacttcagctcaagaagctagtaagcctaaaaaagtggaggaagttgcc
tctgctgttaaagaggaagctaaaacgcctaaagctaatcaagaagcagaaaaagctcct
aaacaaaaagagaataaaaaacctgctaaagataaggatactaaaaaagattctgttaaa
agcaagcctaaaaaggataagcaaacttcaacagctaaaagtgataaaaaagaagctcca
gcaaaagatactaaaactcaagctgagtatataaactattctccagctgttgattttgaa
tctcaagcactagtataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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