KEGG T03403: LO80

Francisella sp. FSC1006: LO80_09685

Entry

LO80_09685        CDS       T03403

Name

(GenBank) RNA-binding protein Hfq

K03666

host factor-I protein

Organism

frf Francisella sp. FSC1006

Pathway

frf02024

Quorum sensing

frf03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:frf00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LO80_09685
09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LO80_09685
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:frf03019]
    LO80_09685
   03036 Chromosome and associated proteins [BR:frf03036]
    LO80_09685
Messenger RNA biogenesis [BR:frf03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LO80_09685
Chromosome and associated proteins [BR:frf03036]
Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LO80_09685

SSDB

Motif

Pfam:

Hfq LSM Carmo_coat_C

Other DBs

NCBI-ProteinID:

AIT10215

UniProt:

A0A097ERM1

Position

1988223..1988552

AA seq 109 aa
MSRISSLQDPFLNALRKEKVSVSVYLVNGIKLQGQVEAFDQFCIVLRNTVNQMVYKHAIS
TIVPAKSVRMVYSSFNPYHQNSNEDQDENVSDVHSDDLEVQENEGNTAE

NT seq 330 nt +upstreamnt +downstreamnt
atgtctagaatatcatctttgcaagacccgttcttaaatgctttaagaaaagaaaaagtt
agcgtatctgtataccttgtaaatggaatcaaattacaaggtcaagtagaagcatttgat
cagttttgtatcgttctaagaaatactgtaaaccaaatggtttataagcatgctatttct
actattgtaccagctaaaagcgtaagaatggtatatagctcttttaacccgtatcaccaa
aattcaaacgaagatcaagatgagaatgtttctgatgtacattctgatgatcttgaagtt
caagaaaatgaaggtaatacagctgagtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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