KEGG   Pseudofrankia inefficax: FraEuI1c_1038
Entry
FraEuI1c_1038     CDS       T01354                                 
Name
(GenBank) histone family protein DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
fri  Pseudofrankia inefficax
Brite
KEGG Orthology (KO) [BR:fri00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fri03032]
    FraEuI1c_1038
   03036 Chromosome and associated proteins [BR:fri03036]
    FraEuI1c_1038
   03400 DNA repair and recombination proteins [BR:fri03400]
    FraEuI1c_1038
DNA replication proteins [BR:fri03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    FraEuI1c_1038
Chromosome and associated proteins [BR:fri03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    FraEuI1c_1038
DNA repair and recombination proteins [BR:fri03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      FraEuI1c_1038
SSDB
Motif
Pfam: Bac_DNA_binding DUF2267 HU-HIG HU-CCDC81_euk_2 PEP-utilisers_N HU-CCDC81_bac_2 DUF2960
Other DBs
NCBI-ProteinID: ADP79111
UniProt: E3IYX3
Position
1310369..1310650
AA seq 93 aa
MNKSQLVDRIAQQIEGGRSNATKAVDAVFHAIQEAVSAGEKVTITGFGVFERVERAERTG
RNPATGEPVHVPASVVPKFRPGSEFKSSVSSNG
NT seq 282 nt   +upstreamnt  +downstreamnt
gtgaacaagtcccaattggttgaccgcattgcccagcagatcgagggtggacggtccaac
gcgaccaaggctgtcgacgcggtcttccacgcgatccaggaagccgtctccgccggcgag
aaggtgacgatcaccggattcggtgtcttcgagcgcgtcgagcgcgccgagcggaccggg
cgcaacccggcgacgggcgagccggtgcacgtccccgcctccgtcgtcccgaagttccgc
ccgggctcggagttcaagtccagcgtctcctcgaacggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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