KEGG   Pseudofrankia inefficax: FraEuI1c_4889
Entry
FraEuI1c_4889     CDS       T01354                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
fri  Pseudofrankia inefficax
Pathway
fri03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    FraEuI1c_4889
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fri03400]
    FraEuI1c_4889
DNA repair and recombination proteins [BR:fri03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FraEuI1c_4889
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      FraEuI1c_4889
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran AAA_29 AAA_16 AAA_21 RsgA_GTPase AAA_23 nSTAND1 AAA_25 AAA_33 APS_kinase AAA_22 NACHT DnaJ_CXXCXGXG Viral_helicase1 cobW MMR_HSR1 NTPase_1 DUF3090 CLU BCA_ABC_TP_C ExoX-like_C IIGP
Other DBs
NCBI-ProteinID: ADP82879
UniProt: E3J1S1
Position
complement(5996411..5999314)
AA seq 967 aa
MTDRLVVRGAREHNLRDVDLDLPRDGLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSA
YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLFARAGRPH
CPKCGRPISRQTPQQIVDRLMELPEGTRFQVLAPMIRGRKGEYVDLFGELQTSGFARARV
DGTVIQLTDPPKLEKQKKHTIEVVVDRLAIKETAKRRLTDSVETALRLGNGLVLVDFVDR
DPKDEDRERMYSEHLACMFDDLSFEELEPRSFSFNTPYGACPECTGLGTRKEVDPELVIT
DPTLSLAEGAIGPWSGGHNKEYFERLLSALAEDLHFKMDTPWEGLPERARKAVLHGSGET
EIHVGYTNRYGRKRSYYTAFEGVIPFLERRQREAESDTSRERYEGYMRDVPCPGCRGARL
KPETLAVTVGGHSIAEVAGLSIRECAEFLATLELTEREQSIAGRVLKEIDARLAFLLDVG
LDYLSLDRSAGTLAGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIRTLVRL
RDLGNTLIVVEHDEDTILASDWVVDIGPGAGEHGGRVVVSGPVSDLLASEESLTGAYLSG
RRSIAVPAVRRPVTKGKMLTVHGAREHNLRDVTVSFPLGCLVAVTGVSGSGKSTLVNDIL
AAVLANKLNGAREVPGRHRTVSGLDHLDKVVRVDQSPIGRTPRSNPATYTGVFDHIRRLF
AETTEAKVRGYLPGRFSFNVKGGRCEACSGDGTIKIEMNFLPDVYVPCEVCAGARYNRET
LEVHYKGKSIAEVLDMPIEEAAEFFAAVPAIARHLRTLDEVGLGYVRLGQSAPTLSGGEA
QRVKLASELQRRSTGRTVYVLDEPTTGLHFEDIRKLLGVLGRLVDAGNTILVIEHNLDVI
KTADWIIDMGPEGGSGGGRVVAEGPPEAVAANQASHTGVFLREIFEGRAEKSAHADAAVL
TATIGAA
NT seq 2904 nt   +upstreamnt  +downstreamnt
atgacggaccggctcgtcgtacggggcgcgcgcgagcacaacctgcgggacgtggacctc
gacctgccgcgcgacgggctgatcgtcttcacggggctgtccggctccgggaagtccagc
ctggcgttcgacacgatcttcgccgaggggcagcgccgctacgtcgagtcgctctcggcc
tatgcgcgccagttcctgggccagatggacaagcccgacgtcgacttcatcgagggcctg
tccccggcggtctcgatcgaccagaagtcgaccaaccgcaacccgcgctcgacggtcggg
acgatcaccgaggtctacgactacctgcgcctgctgttcgcgagggcggggcggccgcac
tgccccaagtgcggccggccgatctccaggcagaccccgcagcagatcgtcgaccgcctg
atggagctgcccgagggcacccggttccaggtgctcgcgccgatgatccgcggccgcaag
ggcgagtacgtcgacctgttcggcgagctccagacctccggtttcgcccgggcccgggtc
gacgggacggtcatccagctcaccgacccgccgaagctggagaagcagaagaagcacacg
atcgaggtcgtcgtcgaccggctcgcgatcaaggagacggccaagcgccggctgaccgac
tcggtcgagaccgcgctgcgcctgggcaacggcctggtgctcgtcgacttcgtcgaccgg
gaccccaaggacgaggaccgcgagcggatgtactccgagcacctcgcctgcatgttcgac
gacctgtcgttcgaggagctggagccgcgctcgttctcgttcaacacgccttacggcgcc
tgccccgagtgcacgggcctgggcacccgcaaggaggtcgacccggagctcgtcatcacc
gacccgacgctgtcgctcgccgagggcgcgatcggcccctggtcgggtgggcacaacaag
gagtacttcgagcggctgctgagcgcgctcgccgaggacctgcacttcaagatggacacc
ccgtgggaggggctgcccgagcgggcccgcaaggcggtgctgcacggcagcggcgagacc
gagatccacgtcggctacaccaaccggtacggccgcaagcgctcgtactacacggccttc
gagggcgtgatcccgttcctggagcgccggcagcgcgaggccgagtcggacacgagccgg
gagcgctacgagggctacatgcgtgacgtgccctgcccggggtgccggggcgcgcggctg
aagccggagacgctcgccgtcaccgtcggcgggcactcgatcgccgaggtcgcgggcctg
tcgattcgcgagtgcgccgagttcctcgcgacgctggagctgacggagcgagagcagtcg
atcgccggccgggtgctcaaggagatcgacgcccggctcgcgttcctgctcgacgtaggg
ctggactacctctcgctcgaccggtcggccgggacgctggccggcggggaggcgcagcgg
atccggctggcgacccagatcggctccggcctcgtcggcgtgctgtacgtcctcgacgag
ccgtcgatcggcctgcaccagcgagacaaccgccgcctgatccgcacgctggtccggctg
cgcgacctgggcaacacgctgatcgtcgtcgagcacgacgaggacacgatcctggcgtcc
gactgggtcgtcgacatcggccccggcgccggcgagcacggcgggcgggtcgtcgtctcc
gggccggtgtccgacctgctggcgagcgaggagtcgctgaccggcgcgtacctgtccggg
cggcgctcgatcgccgtgcccgcggtccgccggccggtcacgaagggcaagatgctcacg
gtccacggcgcccgggagcacaacctgcgcgacgtcaccgtgtcgttcccgctcggctgc
ctggtcgcggtgaccggcgtgtccggctcgggcaagtcgacgctggtcaacgacatcctg
gccgcggtgctggcgaacaagctcaacggcgcccgcgaggtccccggccggcaccggacc
gtctccggcctcgaccacctggacaaggtcgtccgcgtcgaccagtcgccgatcgggcgc
accccgcgctcgaacccggcgacctacaccggcgtgttcgaccacatccggcgcctgttc
gccgagaccaccgaggcgaaggtccgcggctacctgccgggccggttctcgttcaacgtc
aagggcggccgctgcgaggcctgctccggcgacggcacgatcaagatcgagatgaacttc
ctgccggacgtctacgtgccctgcgaggtctgcgccggtgcccggtacaaccgggagacg
ctggaggtccactacaagggcaagagcatcgccgaggtcctcgacatgccgatcgaggag
gccgcggagttcttcgccgccgtcccggccatcgcccgccacctgcggaccctcgacgag
gtagggctcggctacgtccggctcggccagtcggcgccgacgctgtccggcggggaggcc
cagcgggtgaagctcgcctccgagctgcagcgccggtccaccggccgcaccgtctacgtc
ctcgacgagccgaccaccggcctgcacttcgaggacatccgcaagctgctcggcgtgctc
gggcgcctggtcgacgcgggcaacacgatcctcgtcatcgagcacaacctcgacgtcatc
aagaccgccgactggatcatcgacatggggcccgagggcggcagcggtggcggccgggtc
gtcgccgaggggccgccggaggccgtcgccgcgaaccaggccagccatacgggggtcttc
ctgcgcgagatcttcgagggccgggccgagaagtcggcgcacgcggacgcggccgtcctc
accgccaccatcggggcggcctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (24)   
   Pfam (24)   
All databases (32)   

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