KEGG   Flexistipes sinusarabici: Flexsi_0342
Entry
Flexsi_0342       CDS       T01539                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fsi  Flexistipes sinusarabici
Pathway
fsi03030  DNA replication
fsi03410  Base excision repair
fsi03420  Nucleotide excision repair
fsi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fsi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Flexsi_0342
   03410 Base excision repair
    Flexsi_0342
   03420 Nucleotide excision repair
    Flexsi_0342
   03430 Mismatch repair
    Flexsi_0342
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fsi03032]
    Flexsi_0342
   03400 DNA repair and recombination proteins [BR:fsi03400]
    Flexsi_0342
Enzymes [BR:fsi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Flexsi_0342
DNA replication proteins [BR:fsi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Flexsi_0342
DNA repair and recombination proteins [BR:fsi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Flexsi_0342
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Flexsi_0342
   MMR (mismatch excision repair)
    DNA ligase
     Flexsi_0342
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Flexsi_0342
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT BRCT_2 RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: AEI14032
UniProt: F8E8I3
Position
361283..363262
AA seq 659 aa
MSEIKTYEEYIQLVEEIIEHDKRYYVFNNPVISDYEYDQLYKKLEKTEKEHPDWIVDYSP
TQRVGHKVESGLAVKSHEVRMLSLDNTYSKSELENFITRMQKDSSRSFTFVLEPKVDGAA
VSLTYEKGMLTEAVTRGDGYQGEDVLHNIKTVKTLPLYIEHKDKIVVRGEVFLSKDNFDK
INKRREKDGMPLFANPRNAAAGTMKLLNPEIASERSLDIYIYALDVGRVNAEHYKDLQFL
KTIGIKVNPMIEHVSSQDEIFEYINLIEKKRQKLDYEIDGVVIKVNEYNVREELGSTNKS
PRWAVAYKYPAEHARTKLLRVSFQVGRTGIVTPVGIFEPVKVAGSTVSRATLHNEDEIKR
LGIKIGDNVFIEKSGDVIPKVTSVIKDERKGDEKDIKFPDTCPVCGSAVLKDEVDVYYKC
ANPDCPARLKASIVHFAGRNAMDIKGLGEKIVDRFVDLGLLDSIADIYDLKSEDLQELEG
FGAKSAENLIKAIAKSKSKPFSKVLFGLGLPNVGVRTAEILAEKFGDMDTMMKAERKDFE
EIEDIGPVIADGLFRALRNAKITHLVEKLRKAGLNFTYRRVRESDLLKGNTFLITGSLSR
PRKQFEELIKKNGGRVLSGVSSNLDYLICGESPGSKLDKAKELDINIIDEKEFMSMLGE
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgagtgaaataaaaacatatgaagaatatatacagcttgttgaggaaattattgaacat
gacaaaaggtactacgtatttaataatcctgtaatatccgactatgagtacgaccagctt
tataaaaagcttgaaaagacggaaaaagaacatcctgactggatagtggattattcgccc
actcaaagagtagggcataaggttgagtcgggactggctgttaaatcacatgaagtccga
atgctctctctggataatacgtacagcaaatccgagcttgaaaattttattacaagaatg
cagaaggactcttcccgcagctttacctttgtacttgagcctaaggttgacggtgcagcc
gtttctttgacatatgagaagggtatgctgacagaagctgttacccggggggatggttat
cagggtgaggatgtactgcacaacataaaaactgtgaaaacactccctctttatattgag
cataaagataaaattgttgtgaggggggaggtctttttatcaaaagataattttgataaa
ataaacaaaagaagggagaaggatggaatgccgctgtttgcaaatccacgcaatgcagca
gctggaaccatgaaacttcttaatcctgaaattgccagcgaaagatcacttgacatatat
atttatgctttggatgtgggaagggttaatgctgagcattataaagatttacaatttctt
aaaaccataggaataaaagtaaatccaatgatagagcatgtatcctcacaggatgaaatt
tttgaatatattaaccttattgaaaagaaaagacaaaagctggactatgaaattgatggt
gtggttataaaggtgaatgagtacaatgtccgtgaagaactgggcagcacgaataaatcc
ccccggtgggctgtggcatataaataccctgccgagcatgccagaacaaagcttttaagg
gtttcctttcaggtgggacggactggtatagttactccggttggaatctttgagcctgtt
aaggttgcaggctctacagtaagcagggcaacactccacaatgaggatgaaataaaaagg
cttggtataaagataggagacaatgtttttatagagaaaagcggagatgttattccaaag
gtaacgagtgttataaaagatgaaagaaaaggggatgaaaaagatataaaatttcccgat
acctgcccggtatgcggaagtgctgttttaaaagacgaggttgatgtgtattacaagtgt
gcaaatccggactgtcctgcccgtttgaaagcttccatagtacattttgccgggagaaac
gctatggatataaaagggttgggggaaaaaattgtggaccgctttgtagatttggggttg
ttggactcaatagcagatatttatgatttaaagagcgaggatttacaggaactggaaggt
tttggtgcgaaatctgccgaaaatttgattaaagccatagccaaaagtaaatccaaacct
ttttcaaaagtgcttttcggactcggcctgcctaatgtgggtgtcaggacagctgagata
ctcgctgaaaaattcggggatatggacacaatgatgaaggctgagaggaaagattttgaa
gaaattgaagatatcggtcctgtaattgccgacggattgttcagagcactgcggaatgca
aaaattacacatcttgttgaaaaacttagaaaagccggacttaatttcacatacagaaga
gtaagggaaagtgatcttttaaaggggaatacgttcctgatcaccggcagtttaagcaga
ccgagaaaacagtttgaagagttaattaaaaaaaacggcggaagggttctttccggcgtc
agcagtaatcttgattatctcatttgcggtgagtctcccggttctaagcttgataaagcc
aaagaattggatatcaatattatagatgaaaaagaattcatgagcatgctgggtgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (62)   

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