KEGG   Fibrobacter succinogenes: Fisuc_2170
Entry
Fisuc_2170        CDS       T01099                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
fsu  Fibrobacter succinogenes
Pathway
fsu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fsu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Fisuc_2170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fsu03400]
    Fisuc_2170
Enzymes [BR:fsu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Fisuc_2170
DNA repair and recombination proteins [BR:fsu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Fisuc_2170
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 Viral_helicase1 AAA_11 nSTAND3 PIF1 UvrD_C AAA_22 UvrD-helicase SLFN-g3_helicase ATPase_2 T2SSE HHH_5 AAA_23 Helicase_RecD DEAD AAA_28 AAA_29 DUF4291 AAA_16 AAA_14 TrwB_AAD_bind AAA_18 AAA PhoH NTPase_1 NACHT
Other DBs
NCBI-ProteinID: ACX75756
Position
complement(2680503..2682578)
AA seq 691 aa
MRLNDIESKKVVVITGTFPALQPGETISVEGDWGSHPKYGKQFQATSFEYLATEDNDILE
YLASGQFPGVGQKIAERIVEAFGDATADILDNNPDKFREVKIKGFPARKVEAFLARWQEA
RHSRETMLFLYKHEIVGSVAKRLWNKFGQATIERITQNPYMLCEEVWGIGFLKADEIAQK
VGFPKDSPERFQAALLYTLQEASVSDGHVFLPKNVLLERTFRNLRLMQDDEGAINTLLDE
FEKASECGRITREGDDCYFPPLYNAEQRIADNIKLRLRYNELSTEGFEDALAQWEREHKF
SFDPIQKRAIQMALSRKISIITGGPGTGKTTILKGILYLARQMEECVSLTAPTGRAAKRM
GECCGEKARTIHRLLEVDPISGKFHRDGDNKLQCNLLIVDEFSMVDTWLAASLLEATPLN
ARIVLVGDADQLPSVGAGNVLNDLLRCPKIPSTRLQHIFRQAGGNDIADKASKINQGISP
SPIEGTNFHFLPYESADEAKDIIARLVTRGIKEKIDINTQEMQLLTPMRKGPLGIYELNN
FLQDLLNPGKERIKIASGNWSTGDRVMQIRNNYDKNVFNGDVGIIYKIGKDTKKITVFYD
DKTVDYEPDEADELILAYACTIHKSQGSEYPAVIVVLDSSHSIMLQRNLIYTAITRAKGH
VWILSAPGAFYQAVRNNRSTRRYTRLTEKLD
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgcgtctgaacgatattgaaagcaagaaagtcgttgtcatcacgggaacatttcccgct
ttgcaacctggcgaaacaatctctgtagaaggcgactggggttcgcatccgaaatacgga
aagcaattccaggcgacttcttttgaatacctcgccaccgaagacaacgatatccttgaa
tacttggcaagcggtcaatttccgggtgtggggcaaaagattgccgaacgcattgtggaa
gcttttggcgatgcaaccgccgacattctcgacaacaatccagacaagttccgcgaagta
aaaatcaaaggcttccccgcccgcaaggtggaagcttttttggcacgttggcaagaagca
cgtcacagccgcgaaacaatgctgttcttgtacaagcacgaaattgtcggcagtgtggca
aagcgcctttggaacaagttcgggcaagcgacaattgaacgcatcacacagaacccgtac
atgctctgcgaagaagtctggggcatcggattcttgaaggccgacgaaattgcgcaaaaa
gtcggattcccgaaagacagccccgagcgttttcaggccgcattgctttacacattgcaa
gaagcgtctgtgagcgatgggcacgtatttttgcccaagaacgtactcctggaacgcacg
ttccgcaacttgcgtttaatgcaggacgatgaaggcgccatcaacacgctcctcgacgaa
ttcgaaaaggcaagcgaatgcgggcgcatcacgcgcgaaggcgacgactgctattttccg
ccgctttacaatgccgagcagcgcatcgcagacaacatcaagctccgtttgcgatacaac
gagctttcaacggaaggcttcgaagacgccctggcgcagtgggaacgcgaacacaagttc
agctttgacccaatccaaaaacgcgctatccagatggcgctctcgcgaaagatatccatc
atcacaggtggaccaggtacaggcaagacgacaatccttaaagggattttgtacctcgcc
cgccaaatggaagaatgcgtaagcctcaccgccccaacggggcgcgccgccaagcgcatg
ggcgaatgctgtggcgagaaagcccgcacaatccaccgattgctcgaagtggacccgatt
tcgggcaagttccaccgcgatggcgacaacaagctccaatgcaatttgctcatcgtcgat
gaattcagtatggtcgatacgtggcttgccgcctcgctcctcgaagcgacgccactcaac
gcgcgaatcgttctcgtgggcgatgccgaccagctccccagcgtgggagctggcaatgtg
ctgaacgacttgttgcgttgccccaagattccgagcacccgccttcagcacattttccgc
caggccggcggaaacgacatcgccgacaaagcatctaaaatcaatcagggcattagcccc
tcgcccatcgaaggaacgaacttccactttttgccctacgagtcggccgatgaagctaaa
gacatcatcgcccgcctcgtcacgcgcggcatcaaggaaaaaatcgacatcaacacgcaa
gagatgcaactcctcacgccgatgcgcaaaggaccgctcggcatttacgaactgaacaac
ttcttgcaagacctcctgaaccccggcaaggaacgcattaaaattgccagcggcaactgg
agcacaggcgaccgcgtgatgcaaatccgcaacaactacgacaagaacgtgttcaacgga
gacgtcggcatcatctacaaaatcgggaaagacacgaaaaaaattaccgtcttttacgat
gacaagaccgtggattacgagcccgacgaagccgatgaacttatccttgcgtacgcctgc
accatccacaagagccagggtagcgaataccccgccgtcatcgtcgtgctagattcaagc
cacagcatcatgctgcagcggaacctcatctacaccgccatcacgcgtgcgaaaggtcat
gtgtggattttgtctgcaccgggagcgttctatcaagccgtgcgcaacaaccgcagcaca
agacgatacacacgcctcaccgagaagttggattag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (30)   
   Pfam (30)   
All databases (51)   

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