KEGG   Francisella tularensis subsp. novicida U112: AW25_760
Entry
AW25_760          CDS       T03874                                 
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
ftx  Francisella tularensis subsp. novicida U112
Pathway
ftx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ftx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AW25_760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ftx03019]
    AW25_760
   03009 Ribosome biogenesis [BR:ftx03009]
    AW25_760
Enzymes [BR:ftx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     AW25_760
Messenger RNA biogenesis [BR:ftx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AW25_760
Ribosome biogenesis [BR:ftx03009]
 Prokaryotic type
  rRNA processing factors
   AW25_760
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP DnaJ_CXXCXGXG Flu_C_NS1
Other DBs
NCBI-ProteinID: AJI61371
UniProt: A0Q7B2
Position
complement(815412..818069)
AA seq 885 aa
MKRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPEGGGISRRVEGEDRERLKKYLKELNIPKNMSVIARTACVECSFEELKHD
FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ
LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF
QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT
DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ
RQQQHNKAQKDNNQRNERNNNNNKNERNKNRNNKGAKPQIAQENKPQKDNSQRSDLNANG
NSNNDKNERNKNKSNNDKFDKKSNNRNSRSNNLNLNNAEEVIDITQLKYQNQTAIAKTDN
IKKVISKNPDEFISVMVKDVLENYDSLKDDGATKIATQEKIKTNKYLKFDTVSVDTEIAL
LNEVAKSNQTVEVEQITAETEESLSIVDKVDDITIPEVVVEQEKPAKVVKETNQTSEAKP
KKEKQTTTKNNKKEKPAEKEMKQNQAKPEYINYSPAIDFESQALI
NT seq 2658 nt   +upstreamnt  +downstreamnt
atgaaaagaatactaataaatagcaagagtggcgaagaaacaagaattgccaccctagat
aatggcaaattaatagatttagacattgagagcgttgatagagaacaaaaaaaagcaaat
atttacaaaggttatatttcaagaattgaaccaagtttaaatgctatatttgttaactat
ggtgaagaaaaaaatggttttttaccatttaaagaagtatcagagtattatctaaaagat
gttccaaacggtgaaaatatcgcacctttgctttcagaggggcaagaactaattgttcaa
atagataaagaagaacgaggcgataaaggtgcagcattaactacatttattaccttagct
ggttcgtatatggtgttattgccaaataatcctgaggggggtggtatttcccgtcgtgtc
gaaggtgaagatagagaaagattaaaaaaatatctcaaagaattaaatatcccaaaaaat
atgagcgtaatagcaagaactgcttgcgttgaatgctcttttgaagaattaaaacatgat
tttgatactctagttgaattatggggatctatttcacaagcttaccatagaatcaaaaaa
ccagctttattacataaagaaagtgacattattgtaagaacagttagagatcacttaaaa
gaagatgttaaagaaatcatcgttgattctaaagagtgctttgaagatgtcaaaagacag
cttagtttacttagacaaagttttgatataaacaaagtaaaactatacaacgaagaacta
ccattatttgctcagtttggcattgatcaacaaatagaaaatgcttataaaagagaaatt
cgcctaccatctggcggttctatcgtcatagatactacagaggcacttgtagcaatagat
gtaaactcatctcgcgctaacaaagccgaagatgtagaaactacagcatttaaaactaac
ctagaggctgcggaagaagttgctcgtcaacttagaattagagacttaggtggtcttgtt
atagttgactttattgatatgtctttctacccgaatcgaaaacaagtcgaagaaaaacta
atggaagcactacaacaagatagagcacgcatccaaatgtcacgcatttctaaacttgga
cttgttgagatctcaagacaacgtttaagttcttcaattaatgaaagcgtaatgcaaaaa
tgcccacgttgtgagggtcatggttttatcaaaactacgcaagctacagcacttaccatc
ctacgtaaaatcagagcagaagccattaaagaagataccaacgaaattcgtgtccaagtt
cctgtagacatcgcagcatatatactaaatgaaaaaagagatagtattgttgagattgag
agaatttctcaagttaaggttatgattattcctaactttaatatggaatcgccaaagttt
caaatgcagagaatctggggtactagctacaaatcaaatcgtacaagctcagaattaata
gaagatgtttataatattgaaattcctaaagctggtaagaaaaaaattgcggctgtggat
ttaaatcaagctattgaaaatcaagctgctagcaacactcaagaacaaaagcctcaaact
gatgctcaagtagatatagttacacaaaatgataagaaacaagatgatgtaactcaacaa
gctaagaaaaaaggcttctttgctaggctttttagcggtatatttgcaactgattcaaaa
gctgctcagcaagctaataactcagctcaaaaacaacaaaacaaagaacagaatttccaa
aggcagcaacaacataataaggcgcaaaaagataataatcagcgtaatgagcgtaacaat
aacaacaacaaaaatgagcgcaataaaaatagaaacaataaaggagcaaaaccacaaata
gctcaagaaaataaaccacaaaaagacaatagccagcgtagtgatctcaatgctaatggt
aacagtaacaatgataaaaatgagcgcaataaaaataaatcaaacaatgataagtttgat
aaaaaatcaaataaccgtaacagcagaagcaataatttaaatctaaataatgctgaagaa
gttattgatattacgcaacttaagtatcaaaatcaaacagctattgcaaagacagataat
atcaaaaaggtgatttcgaagaatcctgatgagtttatctctgtaatggttaaagatgtc
ttagaaaactatgatagtctaaaagacgatggtgctacaaagatagctacccaggagaaa
attaaaactaacaaatacttaaagtttgatactgtatctgtagatactgaaatagctcta
cttaatgaagtcgctaaatcaaatcaaactgttgaagttgagcaaatcacagctgaaaca
gaagaatctttaagtatcgttgataaagttgatgacataacaataccagaagttgtagta
gagcaagaaaagccagcgaaagtagttaaagaaactaatcaaactagtgaagctaaacct
aaaaaagaaaagcaaactactacaaaaaataataagaaagaaaaaccagctgaaaaagag
atgaaacaaaatcaagctaaacctgaatatataaactattcaccagcgattgattttgaa
tctcaagcactaatatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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