KEGG   Fusobacterium varium: FV113G1_21890
Entry
FV113G1_21890     CDS       T05280                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
fva  Fusobacterium varium
Pathway
fva03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fva00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FV113G1_21890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fva03019]
    FV113G1_21890
   03009 Ribosome biogenesis [BR:fva03009]
    FV113G1_21890
Messenger RNA biogenesis [BR:fva03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FV113G1_21890
Ribosome biogenesis [BR:fva03009]
 Prokaryotic type
  rRNA helicases
   FV113G1_21890
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22 Flavi_DEAD
Other DBs
NCBI-ProteinID: BBA51839
Position
complement(2455888..2457471)
AA seq 527 aa
MEKLEEFKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAF
SLPILERFEPGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQL
KKGTDIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDDKR
MLFFSATMPNEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDL
TKDFYGIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVAT
DVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQK
IVKTEIRKERVPGVKDVIQAKKFRLIEELNHILAENNFDNFKDLSRELLNGEDAVDIVAA
LIKHSYEDVLDESNYNEINNSAPLEKTGKVRLFVALGRKNEMTPKKLVEMVTSKTKVDER
KLKNVEVYENFSFLSVPFQEAEEIIEVFKQDKKGRKPLIEKAKEKKQ
NT seq 1584 nt   +upstreamnt  +downstreamnt
atggaaaaattagaagaattcaaaaaattaggattgggagagaaaacaataaaggctctt
tcaaaaaagggatatgaaaaaccaacacctatacaagctttaactataccagcattatta
gatggagaaaaggatataatagggcaggcacaaacaggaactggaaaaacagcagccttt
tcattgccaatattagaaagatttgaacctggaaaagtagtacaagctattgttttagct
cctactagagagcttgctatccaagttgctgaagaaatgaacagtcttgcaaatggtaaa
aaaataagaataactcctgtatatggaggtcagtcaatagaatttcaaatcagacaatta
aaaaagggaactgatataattgttggaactcctggaagagtaatggatttgatggataga
aaacttataaaattagataaccttaaatatttcatattagatgaggctgatgaaatgctc
aatatgggatttttagaagatgtagaaaaaattcttgaatctacaaatgatgataaaaga
atgcttttcttctctgctacaatgccaaatgaaatattgaaagttgctaaaaaacatatg
agagattatgaagttttagctgtaaaaactagagagcttacaactgatttaactgatcaa
atttattttgaagtacatgaaagagataagtttgaagctttgtgcagaataattgattta
actaaagatttttatggaatagttttctgcagaactaaaaatgatgtaaatgatgtggtt
ggaaagttaaacgatagaggatatgatgctgaagggcttcatggagatatcagccaaaat
tatagagaagtaactttaaagagatttaaagctaaaaaaataaatgtattggtagcaaca
gacgttgctgcaagaggaatagatgtaaatgacctttcacatgtaatcaattattctatc
ccacaagaagctgagagttatgtccatagaataggaagaactggaagagctggaaaagaa
ggaactgctataacatttattactccacaagagtatagaagacttcttcaaatacaaaag
attgtaaaaactgaaattagaaaagaaagagttccaggtgtaaaagatgtaattcaagct
aaaaaattcaggctaatagaagaattaaatcatatattagctgaaaataattttgataat
ttcaaagatctttcaagagaacttttaaatggtgaagatgcagtagatatagttgcagca
ctaattaaacattcatatgaagatgtacttgatgaaagtaattacaatgaaataaataac
agtgctccattggaaaaaactggaaaagtaagattatttgttgctttaggaagaaaaaat
gagatgactcctaagaaattagttgagatggtaactagcaaaactaaagttgatgagaga
aaattaaaaaatgttgaagtatatgaaaatttctcattcctttctgttcctttccaagaa
gcagaagaaattattgaagtattcaaacaagataaaaaaggaagaaaacctttaatagaa
aaagctaaagaaaagaaacaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system