KEGG   Fusobacterium varium: FV113G1_27220
Entry
FV113G1_27220     CDS       T05280                                 
Name
(GenBank) putative DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
fva  Fusobacterium varium
Brite
KEGG Orthology (KO) [BR:fva00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fva03032]
    FV113G1_27220
   03036 Chromosome and associated proteins [BR:fva03036]
    FV113G1_27220
   03400 DNA repair and recombination proteins [BR:fva03400]
    FV113G1_27220
DNA replication proteins [BR:fva03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    FV113G1_27220
Chromosome and associated proteins [BR:fva03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    FV113G1_27220
DNA repair and recombination proteins [BR:fva03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      FV113G1_27220
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG SBDS_domain_II
Other DBs
NCBI-ProteinID: BBA52371
Position
complement(3023027..3023347)
AA seq 106 aa
MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART
CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMNPVVEKKAAKSKKKGK
NT seq 321 nt   +upstreamnt  +downstreamnt
atgacaaaaaaagaatttgtagaattatttggaactaaagctggaataaaaactaaagta
gaagcggacaaacttacaaaagcatttatagatactcttgaagaaattttggtaaaaggt
gaaaatgtgtcattcataggatttggaaaatttgaagctgctgaaagagctgctagaact
tgtgttaatccacaaactaaaaaacctatgaaagtagaagctaaaaaagttgctaaattc
agagctggaaaaaatctattagaaaaaatgaatccagttgttgagaaaaaagctgcaaaa
tctaagaaaaaaggaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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