KEGG   Fragaria vesca (woodland strawberry): 101302602
Entry
101302602         CDS       T02666                                 
Name
(RefSeq) DNA repair helicase XPB1-like
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03022  Basal transcription factors
fve03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    101302602
  09124 Replication and repair
   03420 Nucleotide excision repair
    101302602
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fve03021]
    101302602
   03400 DNA repair and recombination proteins [BR:fve03400]
    101302602
Enzymes [BR:fve01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     101302602
Transcription machinery [BR:fve03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     101302602
DNA repair and recombination proteins [BR:fve03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     101302602
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom DEAD SWI2_SNF2
Other DBs
NCBI-GeneID: 101302602
NCBI-ProteinID: XP_011469566
Position
LG7:complement(13947334..13957498)
AA seq 830 aa
MSKPIQISISLNRRTRKQKRNPKSKHQWDMVSTVSILHLSAFYLQNKRNISLHFNFPGEK
GRRKKLKVSDKAFWLQESTVHVENEDDYYSVCEEDDNVRGGEGRNRDFTKLQLKPDNHNR
PIWACPDGRIFLETFSALYKQAYDFLIAIAEPVCRQELMHEYNLTPHSLYAAVSVGHETE
TIISVLNKLSKTKLPEEVIDFIHSSTANYGKVKLVLKNNRYFVSSPFPEVLKTLLKDHFI
AESRITSEGPHGNKGFTIITTMGETGAGPSDLLNEAELAAVAEEKETRAFEIDPSKVEHV
KQRCLPDCLNYPMLEEYDFNNDTVNPDLDIELKPQSHPRPYQRKSLSIMFGNGRARSGII
VLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTLRDDQICRFTSDSKE
RFRGNAGVVVTTYNMIGFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAEMFRNVIKF
TKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKDGFIANVQCAEVWCPMTKE
FFVEYLKKENSKRKRELYIMNPNKFRACEFLIRFHEEQRGDKIIVFADNLFALTEYAMKL
RKPMIYGATSHAERTKILQAFKTSRDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQ
EAQRLGRILRAKGRPEDRLAGGKEEYNAFFYSLVSTDTQEMYFSTKRQRFLIDQGYSFKV
ITSLPPPESGAELSYHRLGDQLALLSKVLSVDDDKIGLETLEEDADEIALQKARVHRSTG
SMSVMSGASGRVYMEYGTHTQKHKHGKTQIKSTKPRDPMKRHYLFKQRRS
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgagtaaaccaattcaaatttcgatctccctaaaccgaagaacaaggaaacagaagaga
aaccccaaatcaaagcatcaatgggacatggtatccacagtctctattttacatttatcc
gcattctaccttcaaaataagagaaatatatcattgcattttaactttccaggtgagaaa
ggccggcgcaaaaaactcaaagtctctgacaaggcgttttggttgcaggaaagcacagta
catgtggaaaatgaggacgactattacagcgtttgtgaagaggacgacaatgtccgcggt
ggtgaagggagaaatagagactttaccaaactacaattgaagcctgacaaccataatcgg
cctatatgggcttgtccagatggccgaatattcctcgaaactttctcggctttgtacaaa
caagcttatgatttccttattgccattgcggaacccgtttgcaggcaagagttgatgcac
gagtataacttgaccccgcattcattatatgcggcagtctcagttggccatgaaacagaa
acaattatttctgttctgaataagctgtccaagaccaagctccccgaagaggttatagat
ttcatacatagttctacagctaattacggcaaagtgaagcttgtgctaaagaataatcga
tactttgtcagttccccatttccagaggtgctgaagacattgcttaaggaccactttata
gcagaatcaaggattacttctgagggtcctcacggaaataaaggttttacaattatcaca
acaatgggtgaaactggagctggtcctagtgatttgctaaatgaagcagaactggcagct
gtggctgaagaaaaagaaactcgtgcatttgaaattgatccttcaaaggttgagcatgtt
aagcaacgttgtttgccagattgtttgaactatcctatgttggaagaatatgactttaat
aacgataccgttaaccctgatcttgatattgaattaaagcctcaatcccatccccgaccg
tatcaaaggaagagcttgagtataatgtttgggaatgggagagcaagatctggtattatt
gtactgccttgtggtgctggaaaatctctagttggtgtttctgcagcctctcgaataaga
aagagctgcctttgtttagcaacaaatgctgtctcggttgatcagtgggcttttcagttt
aagttgtggtcaactctccgagatgaccaaatttgtcgcttcacatctgatagtaaagaa
agattccgtggaaatgctggggtggttgtgacaacatataacatgattggttttggtgga
aagaggtctgaagaatctgaaaagattattgaagaaataagaaacagagaatggggattg
cttctcatggacgaggtgcatgttgttcctgctgaaatgtttcgaaatgtcatcaaattt
actaaatcgcactgcaagcttgggctcactgccacacttgtcagagaggatgagaagatc
acagacctgaacttccttattggtcccaaattgtatgaagcaaactggttggatttggtt
aaggatggatttattgcaaatgtacagtgtgctgaagtatggtgtccaatgacaaaagag
ttttttgtggaatatttgaagaaagaaaactcaaagagaaagcgggaactttatatcatg
aatccaaataagtttagggcatgcgagtttcttataaggtttcatgaagagcaacgtggt
gataaaattattgtatttgccgataatctatttgcacttacagagtatgcaatgaaactt
cggaaacctatgatctatggtgctaccagccatgccgagaggacaaaaattctacaagct
ttcaaaacaagtcgagacgtaaacaccatatttttgtccaaggtgggtgataattccata
gacattcctgaggcaaatgtgattattcagatctcatcacatgctggttcacgacgtcaa
gaagcacagcgtcttggacgtattttgagggctaagggtcgacctgaggatcggttggca
ggaggtaaggaggagtacaatgcgttcttttattctcttgtgtcgactgatactcaggag
atgtatttttcaactaaacgccagcggtttttgattgatcaaggttacagttttaaggtt
attacaagcttgccccctcctgaatcaggagctgagttgagctatcaccgacttggtgac
caactggcactactttcaaaggtgttgagtgttgatgatgataaaattgggttagagaca
ctagaagaagatgccgatgagattgcccttcagaaagcacgcgtacatcgctcaacagga
tccatgagtgtgatgtcgggtgccagtgggagggtttacatggaatatggtactcatact
cagaaacacaagcatggcaaaacacagataaagagtactaagcccagggatccgatgaag
agacattatttgtttaaacaacgccgtagctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (43)   

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