KEGG   Fragaria vesca (woodland strawberry): 101305540
Entry
101305540         CDS       T02666                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03020  RNA polymerase
fve03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    101305540
  09124 Replication and repair
   03420 Nucleotide excision repair
    101305540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fve03021]
    101305540
   03400 DNA repair and recombination proteins [BR:fve03400]
    101305540
Transcription machinery [BR:fve03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     101305540
DNA repair and recombination proteins [BR:fve03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      101305540
SSDB
Motif
Pfam: RNA_pol_Rpb4 Polysacc_deac_2
Other DBs
NCBI-GeneID: 101305540
NCBI-ProteinID: XP_011460071
Position
LG3:1381897..1385313
AA seq 204 aa
MSDKGGKGFTAVPKGKGKGGKSSLKEATPKGKDDGPAKSKKTRNVQFSSQAAASTKANSG
KGGQADGGAKKDKEPLQLKLENELPKGAKCLMDCEAADILQGVQDHMVILSKDPSIKLPV
SFDRALQYTEKSTNYTDPESVRQVLQNLKTYGVTDGEICVMANVYPETADEVFALLPSLK
ARRIMLDDPVNDVLSELAKLKKSA
NT seq 615 nt   +upstreamnt  +downstreamnt
atgtcggacaaaggtggaaaggggttcactgctgtacctaagggaaagggaaaaggaggc
aaatcttcactcaaggaagctactcccaaaggcaaggacgatggcccagcaaagtccaag
aagaccagaaatgttcagttttcttctcaagctgctgcttccaccaaagccaattcagga
aaggggggacaagccgatggtggagcaaagaaagataaagaaccactgcagctcaaactt
gagaatgaattgccaaagggtgccaaatgtctgatggattgtgaggctgcggatatcttg
caaggagttcaggaccatatggtcatattgtccaaagatccatcaattaaactccctgta
tccttcgatagggcactgcagtacacagaaaaaagcaccaactatacagatcctgagtct
gtcagacaagttcttcagaatctcaaaacatatggtgtcacagatggcgagatttgtgtg
atggctaatgtgtatccagaaactgctgatgaagtttttgctctactcccgtccttgaag
gctaggagaatcatgctcgacgacccagtcaatgatgttttgagtgagctagctaagctt
aaaaagtcggcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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