KEGG   Fragaria vesca (woodland strawberry): 101305698Help
Entry
101305698         CDS       T02666                                 

Definition
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
  KO
K03283  heat shock 70kDa protein 1/2/6/8
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03040  Spliceosome
fve04141  Protein processing in endoplasmic reticulum
fve04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101305698
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    101305698
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    101305698
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:fve01009]
    101305698
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fve03041]
    101305698
   03009 Ribosome biogenesis [BR:fve03009]
    101305698
   03110 Chaperones and folding catalysts [BR:fve03110]
    101305698
   04131 Membrane trafficking [BR:fve04131]
    101305698
   03051 Proteasome [BR:fve03051]
    101305698
   03029 Mitochondrial biogenesis [BR:fve03029]
    101305698
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:fve04147]
    101305698
Protein phosphatases and associated proteins [BR:fve01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     101305698
Spliceosome [BR:fve03041]
 Complex B
  Other components
   Prp19 complex
    101305698
 Complex C
   Prp19-CDC5 complex
    101305698
Ribosome biogenesis [BR:fve03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    101305698
Chaperones and folding catalysts [BR:fve03110]
 Heat shock proteins
  HSP70 / DNAK
   101305698
Membrane trafficking [BR:fve04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    101305698
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    101305698
Proteasome [BR:fve03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    101305698
Mitochondrial biogenesis [BR:fve03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    101305698
Exosome [BR:fve04147]
 Exosomal proteins
  Proteins found in most exosomes
   101305698
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HSP70 MreB_Mbl FGGY_C Hydantoinase_A
Motif
Other DBs
NCBI-GeneID: 101305698
NCBI-ProteinID: XP_004307259
Position
LG7
AA seq 649 aa AA seqDB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKN
QVAMNPVNTVFDAKRLIGRRFNDPSVQGDIKHWPFKVVAGPAEKPMIVVSYKGEEKQFSA
EEISSMVLTKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKHKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFY
TSITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNQKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKK
KVESKNALENYAYNMRNTIKDDKIASKLDAADKKKVEDAIEQAIQWLDGNQLAEAEEYDD
KVKELEGICNPIIAKMYQGGAPPDMAGGIDEEVPPSGGSGAGPKIEEVD
NT seq 1950 nt NT seq  +upstreamnt  +downstreamnt
atggccggaaaaggagaaggacccgccatcgggatcgacctcggaaccacctactcttgc
gtcggagtgtggcagcacgaccgtgtcgagatcatagccaacgaccaggggaacagaacg
acgccgtcctatgttgccttcactgacactgagcggttgattggtgacgccgccaagaac
caggtcgccatgaaccccgtcaacaccgtcttcgatgcgaagaggttgattggtagaaga
tttaatgacccatctgttcagggtgatattaagcactggcctttcaaggtcgttgcgggt
cctgctgaaaagccaatgattgtggtttcatacaaaggtgaagagaagcaattttctgct
gaggagatttcgtctatggttctcaccaagatgcgggagattgcagaggcctatctcggc
tcaacggtgaaaaatgcagttgttactgtgccggcttatttcaatgattcacagcgtcag
gctacgaaggatgctggggtcattgctggtcttaatgtgatgcgtattatcaatgagcct
actgctgcagccatagcttatggtctcgacaagaaggcaaccagtgtaggggagaagaat
gtcttgatttttgatcttggtggagggacatttgatgtctctctgcttacaattgaagag
ggtatttttgaagtcaaggctactgctggtgatactcatttgggaggagaagattttgat
aacaggatggtgaatcactttgttcaggagttcaagagaaagcataagaaggatataact
ggaaatccaagagctcttcgaagattgaggacggcttgtgagagagcaaagaggactctc
tcatccactgctcaaacaaccattgagattgactctctgtatgagggtgttgatttctat
acatctatcactcgtgcaagatttgaagagctgaacatggatttgtttaggaagtgcatg
gagccggttgagaagtgtttgagagatgcaaagatggacaagagcagtgtccatgatgtt
gtgctggtgggtggttctactaggattccaaaggtgcaacagttgcttcaagacttcttt
aatggaaaggagttgtgcaaaagcatcaaccctgatgaggctgtagcttatggtgcagct
gtgcaagctgctattttgagtggtgagggcaatcagaaggtgcaggacctattgcttctg
gatgtcactcctctgtccttgggtttggaaactgctggaggtgttatgactgttttgatc
ccaaggaatactaccattccgactaagaaggagcaggtgttctctacatattccgacaac
caacccggtgtcttgattcaggtctttgagggtgagagggctagaacccgcgataacaac
ttgttgggcaaatttgagctctctggcattcctcctgctccaaggggtgttccccagatt
accgtgtgcttcgacattgatgccaacggtatcctcaatgtctctgctgaggacaagaca
actggacagaagaacaagattaccatcacaaatgacaagggaagactatccaaggaggat
atcgagaagatggtacaggaggctgagaaatacaaatcagaagatgaagagcacaagaag
aaggttgagtccaagaatgccctggagaattatgcctacaacatgaggaacacaattaag
gatgacaagattgcttcaaagctcgacgcagccgacaagaagaaggttgaggatgcaatc
gaacaggcaatacaatggcttgatggcaatcaacttgcagaggcagaggagtatgatgac
aaggtgaaggagcttgagggcatttgcaacccgatcattgctaagatgtaccagggtggt
gctcctcctgacatggctggtggcatagatgaagaggttcctccttcaggtggcagtggc
gctggtcctaagattgaagaagtagactaa

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