KEGG   Fragaria vesca (woodland strawberry): 101310667
Entry
101310667         CDS       T02666                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03030  DNA replication
fve03410  Base excision repair
fve03420  Nucleotide excision repair
fve03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101310667
   03410 Base excision repair
    101310667
   03420 Nucleotide excision repair
    101310667
   03430 Mismatch repair
    101310667
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fve03032]
    101310667
   03400 DNA repair and recombination proteins [BR:fve03400]
    101310667
DNA replication proteins [BR:fve03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101310667
DNA repair and recombination proteins [BR:fve03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101310667
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_22 PTCB-BRCT DNA_pol3_delta Rad17 AAA_30 BRCT_2 AAA_assoc_2 AAA_18 nSTAND3 RuvB_N AAA_5 Zeta_toxin AAA_24 AAA_19 AAA_14 Sigma54_activ_2 Gp44_lid SurA_N
Other DBs
NCBI-GeneID: 101310667
NCBI-ProteinID: XP_011459476
Position
LG2:complement(30846607..30858884)
AA seq 968 aa
MSQADIRKWFMKSHDKGNASKPAPAPAALPKQSTQSQEQKVHGGQESSGRRKTSKHFPPN
KSKPDEEKETVQVPAKRKIQSGPVESSRPSPAKKVQKVEDDDDDDFVMPQSKKKEATPSK
KLKTASGKGIPQELKSADESDDDEAKGSEAPHKSGGRGRGGRGSSSAAPAGGRGRGAGRG
GFMNFGERKDPPHKGEKDVPEGDPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGS
VSKKTSYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDKIRASIRAKAPVQEAKKLVDSAQ
ETSLPNISPKKVALKSSADGTSSSLACRVSQKQSSSDASLARRKEKTTEHSALTWTEKYR
PKVPNDIIGNQSLVKQLHDWLAHWHEQFLDTGIKKKGNKSNNSGAKKALLLSGTPGIGKT
TSAKLVSQMLGFEAIEVNASDSRGKADSKIVKGVGGSNSNSVKELISNMALSMDRSKHPK
TVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKP
TKQQMAKRLKQVANAEGLQVNEIALEELADRVNGDMRMALNQLHYMSLSMSVIKYEDVRQ
RLRSSEKDEDISPFTAVDKLFNFNAGKLRMDERVDLSMSDPDLVPLLIQENYVNYRPSAA
AKDNSGVERMNLIARAAESIGNGDIINVQIRKYRQWQLSQSGSLSSSIIPAALLRGQRET
LEQGERNFNRFGGWLGKNSTFGKNLRLLDDLHVHLLASRASSSGRETLRVEYLPLLLKRL
SVPLRKLPKDEAVQEVVEFMNTYSISQDDYDTIVELSKFQGHPNPLEGIQPAVKAALTKA
YKEGSKSRVRVAEFVTFPGMKKAPKKRIAAILEPSDEAIGENNDDTLVLSEEENSSDAED
LESSAVGEKLQQELQSLNRKGVQVQLDMKGAANTSAKRTLAGRGKGASSGTSEKKGGRGS
GSGSKRKR
NT seq 2907 nt   +upstreamnt  +downstreamnt
atgtcgcaggctgatatcagaaagtggtttatgaagtcccacgacaagggcaatgcctcc
aaaccggctccggctccggctgctttgcccaaacagtccacacaatctcaagaacagaaa
gtgcatggaggtcaagaaagttcaggcagaaggaaaactagcaagcattttcccccgaat
aagtcaaagccggatgaggaaaaggaaacggttcaagtgccagcaaagcgaaagattcaa
tcgggtcctgttgaatctagcagaccctcgcctgcgaaaaaagttcagaaagttgaggat
gatgacgacgatgattttgttatgcctcaatctaagaagaaagaagccacgcctagcaag
aaactgaagactgcatctggcaagggaattccacaggagctgaagtctgcagatgaaagt
gatgatgatgaagccaagggttctgaggctcctcacaaatctggtggtaggggtcgcggt
ggaagaggtagttcatcggctgctccagctggtggaagaggcagaggcgctggacggggt
ggatttatgaattttggtgaaaggaaagatccgccgcacaaaggggaaaaggatgttcct
gaaggtgatccaaactgtttagctggtttaacttttgtaataagtggtacacttgatagt
ttggaaagagaggaggcagaagatttaataaaacgccatggaggccgtatcactggatct
gtcagcaagaaaacgagctatcttttatgtgatgaagatattgagggcaggaaatcctca
aaagccaaagaacttgggacggctttccttaccgaggatggattgtttgataagattcgt
gcatcaattcgtgctaaagcacctgtgcaagaagcaaagaaacttgtggatagtgcccaa
gaaacatctttgcctaatataagccctaagaaagtagcattaaagagttcagcagatggc
actagcagctccttggcatgtagggtatcccaaaaacagtcatcatcagatgcttccctt
gctaggcgcaaagagaaaactacagagcattctgctttgacatggacagaaaaatataga
ccaaaggttccaaatgacattattggtaatcagtcactggtaaaacagcttcatgattgg
ttggcacattggcatgagcaattccttgatactggaattaagaaaaaaggcaataaatca
aacaattcgggtgctaaaaaagctttattattaagtggaacacctggtatagggaaaaca
acgtcagcaaagttggtcagtcagatgctcggtttcgaggcaattgaggtaaatgcaagt
gacagtcgagggaaagctgattccaagattgtcaagggagtcggtggaagcaattcaaat
tctgttaaagagctcatcagcaatatggctctaagcatggatagatctaagcatccaaaa
actgtgctcattatggatgaggttgatggaatgtcggctggtgatcggggtggagttgct
gatcttattgccagcataaagatttctaaaattcccattatctgcatttgtaatgatcgt
tacagtcagaaactgaaaagtcttgtgaactactgtttgcttctcagcttccgcaaacca
actaagcaacagatggcaaagaggttgaagcaagttgcaaatgctgaaggtcttcaagtg
aatgagattgctctcgaggaacttgcagacagagttaacggagacatgcgaatggcactt
aaccagttgcattacatgagtctgtcaatgtctgtcataaaatatgaagatgtaaggcaa
cgcctgcgaagcagtgaaaaggatgaggacatttcaccattcacagctgttgataagctg
tttaatttcaatgctgggaagttgcggatggatgagcgggttgacctgagcatgagtgac
ccagatctagtccctcttcttattcaggaaaattatgttaactacaggccaagtgcggct
gcgaaggataatagtggtgttgaacgtatgaacttgattgcccgtgcggctgagtctatt
ggcaatggggatattatcaatgtacaaattagaaaatatcgccaatggcaactttcccaa
agtggttctctgtcatccagcataattccggctgctttgttgcgcggtcaaagggagacg
cttgagcagggagaaagaaattttaatagattcggagggtggctgggaaagaactcaaca
tttggcaaaaatctgaggctcttagatgatttgcatgtccatcttcttgcatctcgtgca
tctagttcaggaagggagaccctccgagttgaataccttccgctccttctgaaacgatta
tctgtgccactgcgaaaattaccgaaggacgaagccgttcaggaagttgtggagttcatg
aatacttactcaattagtcaggatgactatgatactatcgtcgagttatcaaaatttcag
gggcatccaaatcctctggagggcatccagccggctgtaaaagcagctctgacaaaagca
tacaaagaaggtagcaaatcaagggtacgagttgcagagtttgtcactttccctggaatg
aaaaaggctcctaagaagaggatcgcagctattttagaaccatctgatgaagcaattgga
gagaacaatgatgatactttggttctaagtgaagaagaaaattcatcggatgcagaggac
ttggaaagctctgctgttggggagaagctgcagcaggaacttcaaagtttgaatagaaaa
ggagttcaagttcaattggatatgaaaggtgcagcaaatacaagtgccaagaggacactg
gctggaagaggtaaaggtgcttcttctggtacctctgagaaaaaaggtggccgaggttca
gggtctggttccaaaagaaagagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (21)   
   Pfam (21)   
All databases (63)   

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