KEGG   Gossypium arboreum (tree cotton): 108460449
Entry
108460449         CDS       T05776                                 
Name
(RefSeq) elongation factor 1-alpha-like
  KO
K03231  elongation factor 1-alpha
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108460449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108460449
   03016 Transfer RNA biogenesis [BR:gab03016]
    108460449
   03012 Translation factors [BR:gab03012]
    108460449
   04131 Membrane trafficking [BR:gab04131]
    108460449
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:gab04147]
    108460449
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Trans-acting binding proteins
     108460449
Transfer RNA biogenesis [BR:gab03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    108460449
Translation factors [BR:gab03012]
 Eukaryotic type
  Elongation factors
   108460449
Membrane trafficking [BR:gab04131]
 Autophagy
  Chaperone mediated autophagy (CMA)
   Other CMA associated proteins
    108460449
Exosome [BR:gab04147]
 Exosomal proteins
  Proteins found in most exosomes
   108460449
SSDB
Motif
Pfam: GTP_EFTU GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 FlpD Semialdhyde_dhC AAA_22 SRPRB
Other DBs
NCBI-GeneID: 108460449
NCBI-ProteinID: XP_017615431
UniProt: A0A0B0PVC6
Position
12:115719469..115722206
AA seq 449 aa
MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK
VGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD
VYKIGGIGTVPVGRVETGILKPGMVVTFGPSGLTTEVKSVEMHHESLPEALPGDNVGFNV
KNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF
AELVTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQT
VAVGVIKSVEKKDPTGAKVTKSAAKKGGK
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgggcaaggaaaagactcacattaacattgtcgtaattggccatgtcgactctggaaag
tcaaccaccactggccacttgatctacaagcttggaggtattgacaagcgtgtcattgaa
aggtttgagaaggaagctgccgagatgaacaagaggtcattcaagtatgcttgggtgctt
gacaagttgaaggctgagcgtgaacgtggtattaccattgacattgccctgtggaagttt
gagaccaccaaatattactgcactgtcatcgatgcccctggacatcgtgactttatcaag
aacatgattactggtacctcccaggccgattgtgctgtccttatcattgactctaccact
ggaggttttgaggcaggtatttccaaggatggacagacccgtgagcatgctctgcttgct
ttcactctcggtgtcaagcaaatgatttgctgctgcaacaagatggatgccacaaccccc
aaatactcaaaggctaggtatgatgaaattgtgaaggaagtgtcttcctacttgaagaag
gttggttacaaccctgagaagattccttttgtccccatctctggttttgagggtgacaac
atgattgaaaggtccaccaaccttgattggtacaagggtccaactcttctcgaggctctt
gaccagatcaatgagcccaagagaccctctgacaagccactccgtcttccacttcaggat
gtgtacaagattggaggtattggaactgtcccagtgggtcgtgttgaaactggtatcctc
aagcctggtatggttgtaacctttggtccctctggattgaccaccgaagttaagtctgtt
gagatgcaccatgagtctcttcctgaggctcttccaggtgacaatgttggcttcaatgtc
aagaatgttgctgtgaaggatctgaagcgaggatatgttgcttcgaactcaaaggatgat
cctgccaaggaggcagctaatttcacttcccaagtcatcatcatgaaccacccagggcag
attggaaatggatatgcgcctgtccttgattgccacacgtcccacattgcggtcaagttt
gcagagttggtgaccaagattgacaggcgttctggtaaggagcttgagaaggaacccaag
ttcttgaagaatggtgatgcaggatttgttaagatgattcccaccaaacccatggttgta
gaaaccttctctgagtatcccccactgggtcgttttgctgtgagggacatgaggcagact
gttgctgtcggcgttatcaagagcgtggagaagaaagatccaactggagccaaggtgacc
aagtctgctgccaagaagggtgggaagtga

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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