KEGG   Gossypium arboreum (tree cotton): 108460706
Entry
108460706         CDS       T05776                                 
Name
(RefSeq) THO complex subunit 1 isoform X1
  KO
K12878  THO complex subunit 1
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03013  Nucleocytoplasmic transport
gab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108460706
  09122 Translation
   03013 Nucleocytoplasmic transport
    108460706
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108460706
   03041 Spliceosome [BR:gab03041]
    108460706
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     108460706
Spliceosome [BR:gab03041]
 Complex C
  Other components
   EJC/TREX
    108460706
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108460706
SSDB
Motif
Pfam: efThoc1 CENP-X
Other DBs
NCBI-GeneID: 108460706
NCBI-ProteinID: XP_017615792
UniProt: A0A0B0MSX7
Position
12:complement(66918434..66929526)
AA seq 611 aa
MMEAFRKAILQAGPPETFALKTVQEVIKPQKQTKLAQDENQLLENMLRTLLQELVSSAVQ
SGEEIMLYGKSIDDVDEMQGVIPRLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCK
DIFRYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLS
ERSAVNIKGVFNTSNETKYEKDPPEGISVDFNFYRTFWSLQEYFCNPASLSNAPIKWQKF
TASLMVVLNTFDAQPLSEEEGAENNLEEEATTFNIKYLTSSKLMGLELKDPSFRRHILLQ
CLILFDYLKAPGKNDKDSSESMKEEINSCEDRVKKLLEVTPPKGKDFLHSIEHILDREKN
WVWWKRDGCQPFEKQPIEKKTVHDGAKKRRTRWRLGNKELSQLWKWADQNPNALTDSQRV
RTPTISDYWKPLAEDMDDSAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSKFTEHGIEG
VVPLELLPPEVRSKFQGKPSDRSKRAKKEEMRSTSHQVEESQIATPASEIEGEGIRADAE
ASVAVMDTDVSAATGNNSQGGTPTPEPDEHQKQSPDTDVGQEAGQLEADAEVETGMIDGE
TDPEAESDHVG
NT seq 1836 nt   +upstreamnt  +downstreamnt
atgatggaagcattcaggaaagccatattgcaggctggcccgccggaaacttttgcactt
aagacggttcaagaggttataaagcctcagaaacaaacaaagttagctcaagatgaaaac
caattattggagaacatgcttcggaccttgcttcaggaattggtgtcatctgcagtacag
tctggggaggagataatgctgtatgggaagtcaattgatgatgttgatgaaatgcagggt
gtaattccacgacttctagatgttgtgctctatctttgtgagaaagaacatgttgaaggt
ggtatgatattccagcttctagaggacttgacagaaatgtctacaatgagaaattgcaaa
gacatttttcgttatatagaaagtaagcaggacatcctggggaagcaagagctttttgct
cgtggaaaacttgtcatgttgagaacatgcaatcaacttcttcgtcgactgtccaaggca
aatgatgtggtattttgtgggcgaatcctaatgtttctggctcatttctttccattatct
gaacgttcagctgtgaatataaagggagtttttaacacatcaaatgagacaaaatatgag
aaagacccacctgaaggcatttctgttgatttcaacttctatagaaccttctggagttta
caggaatacttttgcaaccctgcttccctttcaaatgctcctataaagtggcagaaattt
acagctagtttaatggttgtgttgaatacatttgatgcacagcctttgagtgaggaagag
ggagctgagaacaatttggaggaagaggcaaccactttcaacatcaaatatcttacaagc
agtaaattgatgggcttagagttaaaagatccaagtttcaggcgccacattcttttgcag
tgcctcatactatttgattatcttaaggccccaggaaagaatgataaagattcatctgaa
agcatgaaagaagaaattaattcttgtgaagatcgagtgaagaaactactcgaagtgact
cctccgaaggggaaagattttcttcatagtattgagcatatattagatcgtgaaaagaat
tgggtctggtggaaacgtgatggctgtcaaccatttgaaaagcagccaatagagaaaaaa
acagttcatgatggagctaagaaacgtcggacaaggtggagattggggaataaagaactc
tctcagttgtggaagtgggcagatcagaatccgaatgctttgacagactctcaacgtgtt
cgaactcctacaatctcagattactggaaacccttggctgaagatatggatgattctgca
ggaatagaagctgaatatcaccacaaaaataacagggtttattgctggaagggccttcgt
ttttctgctaggcaagacttagaagggttctcaaaatttaccgaacacggtattgaagga
gttgttccattggaacttctcccccctgaagtgcgatcaaagttccaaggtaaacctagt
gacaggtcgaaacgtgccaaaaaggaggagatgaggagtacttcacatcaggttgaggaa
agtcagattgcaacaccggcaagtgagattgagggagaaggaatcagagctgatgcggag
gcctctgtagcagtgatggatacggatgtctcagctgcaacaggaaataattcccaaggg
ggcaccccaaccccagaaccagatgaacatcaaaagcaaagccctgatacagatgttgga
caagaagctgggcaattagaagcagatgctgaagtggagactgggatgatagacggtgag
acagatccagaagctgaatctgatcatgtaggatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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