KEGG   Gossypium arboreum (tree cotton): 108461137
Entry
108461137         CDS       T05776                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
  KO
K07466  replication factor A1
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03030  DNA replication
gab03420  Nucleotide excision repair
gab03430  Mismatch repair
gab03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108461137
   03420 Nucleotide excision repair
    108461137
   03430 Mismatch repair
    108461137
   03440 Homologous recombination
    108461137
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:gab03000]
    108461137
   03032 DNA replication proteins [BR:gab03032]
    108461137
   03400 DNA repair and recombination proteins [BR:gab03400]
    108461137
Transcription factors [BR:gab03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    108461137
DNA replication proteins [BR:gab03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    108461137
DNA repair and recombination proteins [BR:gab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     108461137
   MMR (mismatch excision repair)
     108461137
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     108461137
SSDB
Motif
Pfam: Rep_fac-A_C Rep-A_N REPA_OB_2 tRNA_anti-codon
Other DBs
NCBI-GeneID: 108461137
NCBI-ProteinID: XP_017616346
Position
13:complement(83188817..83192077)
AA seq 629 aa
MPVNLTRNAIAMMNSGDVNSKPLVQVVDIKLIGNSQERYRFLLSDSESTQHAMLATQLNE
QVRTGRVKKGSIIQLIDYICSTVQNRRIIVVLNMETIIPEYEIIGNPKLLMGSEPEANKS
MPNNNLFEPSTRSTNNRYSAPAPANKAQSFQPTIQPAYQPPPNYKIQGPIMKNEAPARII
PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR
FYNVIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESNSTVELCPDEDGSIPRQQFSFR
PITEIESAENNSILDVIGIVISVNPSVPILRKNGMETQRRILNLKDVSGKSVELTLWGDF
CNKEGQKLQEMVDSGLFPVLAVKAGKVNDFNGKSIGTISSTQLFIDPDCPEAQGLRAWFE
SGGRNTASISISKEIMPGGSKNEIRKTLTQIKDEGLGRSDKPDWVTAKATVVFIKTDNFC
YTACPLMIGDRQCNKKVTQSGNKRWLCDRCNQEFEECDYRYLLQVQIQDHTGLTWVTAFQ
EAGEEILGCSAKEMYLLKYELQDDTQFGEIIRSRLFHQYLFRLKIKEELYGDEQRVKITV
VKVDKVNYSAESRYLLDMVTKNLPNRKQF
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgccggtgaatctcacgcgcaacgcgattgccatgatgaacagcggcgatgttaactcc
aagccgttggttcaggtggtggatattaagctgattggcaactctcaggagaggtaccgg
tttttgttatccgattctgaatcaactcagcacgcaatgctcgccactcagctcaatgaa
caagtcaggaccggacgagtcaagaaaggatctatcatccagttgatcgattacatttgc
agcactgtccaaaatcgcaggattattgttgtgctgaatatggagactataattccagag
tatgaaataatcgggaatcctaaacttcttatgggttctgagcccgaagctaacaagtca
atgcctaataacaatttgtttgagccttctacgaggtccaccaataatagatatagcgcc
ccagctcctgctaataaggcccagagttttcagccaactattcaacctgcataccagcca
cctccaaattacaaaattcagggcccaataatgaagaatgaagcaccagcacgcattatt
cctattgctgctctaaatccttatcaaggacgttgggctatcaaggctcgagtgactgca
aaaggggaccttcgtcgctacaacaatgctagaggagatgggaaggtcttctcctttgac
ctccttgactctgatggaggggaaatacgagtaacttgcttcaacgctgttgttgatcgc
ttctacaatgttattgaagttggtaaagtttacttgatttcaaagggtagcttgaaaccc
gcgcaaaagaatttcaaccatttgaagaatgagtgggagatattcttggaatcaaattca
accgtggagctttgccctgatgaagatggctctattccaagacaacagttctccttcaga
cctatcactgaaattgagagtgctgaaaacaattctatacttgatgttatcggtattgtg
atatctgttaacccttcagttcctattttgaggaagaatggtatggaaactcagagaagg
attctgaatttaaaggatgtatctggaaagagtgttgagctaaccctttggggtgatttc
tgcaacaaggaaggtcaaaagctgcaagaaatggtcgattctgggcttttcccagttttg
gcggttaaagctggaaaggtcaatgacttcaatgggaagtccattggcactatttcttcc
acacagctctttatagatccagattgtccagaggcacagggcctgagagcatggtttgaa
agtggggggagaaatacagcttctatctcaatttctaaagaaattatgcctggaggatcc
aaaaatgagatacgtaaaaccttgactcagatcaaggacgaaggtctcggaagatctgat
aagccagattgggtcacagccaaggcgactgtagttttcattaaaacagataatttctgt
tatacagcctgcccattgatgattggagatagacaatgcaataagaaagtaacacaatcc
ggtaataaaagatggctttgtgaccgttgcaaccaagaattcgaggaatgtgattacaga
tatcttctccaggtccagattcaagaccatacaggactcacttgggtaacagctttccag
gaagctggcgaagaaatcttgggatgctcggcaaaggaaatgtatttattgaaatatgaa
ttgcaggacgatacccaattcggtgaaataattcgcagccgactctttcaccaatatttg
tttaggcttaaaataaaagaggaactctatggtgacgagcagagggtaaaaatcactgtg
gtgaaggttgacaaggtgaactactctgcagaaagcaggtaccttctcgatatggttaca
aagaatttgccgaatagaaaacaattctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system