KEGG   Gossypium arboreum: 108463321Help
Entry
108463321         CDS       T05776                                 

Definition
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
  KO
K03283  heat shock 70kDa protein 1/2/6/8
Organism
gab  Gossypium arboreum
Pathway
gab03040  Spliceosome
gab04141  Protein processing in endoplasmic reticulum
gab04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108463321
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108463321
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    108463321
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:gab01009]
    108463321
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gab03041]
    108463321
   03009 Ribosome biogenesis [BR:gab03009]
    108463321
   03110 Chaperones and folding catalysts [BR:gab03110]
    108463321
   04131 Membrane trafficking [BR:gab04131]
    108463321
   03051 Proteasome [BR:gab03051]
    108463321
   03029 Mitochondrial biogenesis [BR:gab03029]
    108463321
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:gab04147]
    108463321
Protein phosphatases and associated proteins [BR:gab01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     108463321
Spliceosome [BR:gab03041]
 Complex B
  Other components
   Prp19 complex
    108463321
 Complex C
   Prp19-CDC5 complex
    108463321
Ribosome biogenesis [BR:gab03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    108463321
Chaperones and folding catalysts [BR:gab03110]
 Heat shock proteins
  HSP70 / DNAK
   108463321
Membrane trafficking [BR:gab04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    108463321
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    108463321
Proteasome [BR:gab03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    108463321
Mitochondrial biogenesis [BR:gab03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    108463321
Exosome [BR:gab04147]
 Exosomal proteins
  Proteins found in most exosomes
   108463321
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HSP70 MreB_Mbl Hydantoinase_A
Motif
Other DBs
NCBI-GeneID: 108463321
NCBI-ProteinID: XP_017618763
Position
13
AA seq 525 aa AA seqDB search
MTAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTNSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFTDSSVQSDIKLWPYKVIAGSGDKPMIIVSYKGEDKQFSA
EEISSMVLTKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSIGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKNKKDIGGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFY
STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQSLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKIEKMVQEAEKYKSEDEEHKKKVEAKNA
LENYAYNMRNTIKDEKIGSKLSPDDKKKIEGAIDAAINWLDANQLAEADEFEDKMKELES
LCNPIIAKMYQGGAGPDMGGAGGMADDVPPSRGGGGAGPKIEEVD
NT seq 1578 nt NT seq  +upstreamnt  +downstreamnt
atgactgcaaaaggagaaggacccgctatcggaattgatctaggcacgacctactcctgt
gtcggagtatggcaacatgaccgagtcgaaatcatcgccaatgaccaaggtaacagaacg
acgccgtcttacgtcgctttcaccaattccgagcgtttaatcggcgacgctgctaaaaat
caagtcgccatgaaccctatcaacaccgtctttgatgctaagaggctaattgggcgaaga
ttcactgattcatcggttcaaagcgatataaagctttggccatacaaggtgattgccggc
tccggggataaaccgatgatcatcgttagttacaaaggcgaagacaagcaattctccgcc
gaggaaatctcttccatggtgttaaccaaaatgcgtgaaatcgccgaggcttacctcggg
tccacaatcaagaacgcagtcgtcaccgtccctgcttatttcaacgattcccaaaggcaa
gccaccaaggatgccggtgtaatcgccggtctcaatgtcatgcgtatcatcaacgaacca
accgccgccgccattgcttacggcctcgacaagaaagcaaccagcatcggcgaaaaaaac
gtactgatcttcgatttaggtggcggtaccttcgatgtttcgttgcttacgatcgaagaa
gggattttcgaagtcaaagccaccgccggcgatactcatttaggcggcgaggattttgat
aatcgaatggtgaatcatttcgttcaagaatttaaaaggaagaacaagaaggacattggt
ggaaaccctagagctttgagaagattgagaactgcttgtgaaagagctaaaaggacactt
tcgtctacagctcaaaccaccattgaaatcgattccttgttcgaaggtatcgatttttat
tctacgataactcgagctcgattcgaagaactcaacatggatttattcagaaaatgtatg
gaacctgttgagaaatgtttgagagatgctaaaatggataaaagtactgtccatgatgtt
gttcttgttggtggttcaactaggatccccaaagtccaatccttgttacaagatttcttc
aatgggaaagagctttgtaaaagtattaaccccgatgaggccgtcgcatatggcgcagcg
gttcaagcagcgattttaagcggcgaagggaacgaaaagatcgaaaaaatggtgcaagag
gccgaaaaatataaatccgaagacgaagaacataagaagaaagttgaggcgaaaaatgca
ttagagaattatgcttataacatgaggaacacaattaaagatgaaaagattggttcaaag
ctttcacctgatgataaaaagaaaattgagggcgccattgatgctgctattaattggctt
gatgctaatcaattggctgaagctgatgaatttgaagataaaatgaaagagcttgagagt
ctttgtaatccaattattgctaagatgtatcaaggcggagctggaccggatatgggtggt
gctggtggcatggctgatgatgttccaccgtctcgtggcggcggtggtgctggtcccaaa
attgaagaagttgattaa

DBGET integrated database retrieval system