KEGG   Gossypium arboreum (tree cotton): 108466554
Entry
108466554         CDS       T05776                                 
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
  KO
K12875  apoptotic chromatin condensation inducer in the nucleus
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03013  Nucleocytoplasmic transport
gab03015  mRNA surveillance pathway
gab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108466554
  09122 Translation
   03013 Nucleocytoplasmic transport
    108466554
   03015 mRNA surveillance pathway
    108466554
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108466554
   03041 Spliceosome [BR:gab03041]
    108466554
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108466554
Spliceosome [BR:gab03041]
 Complex C
  Other components
   EJC/TREX
    108466554
SSDB
Motif
Pfam: RSB_motif SAP
Other DBs
NCBI-GeneID: 108466554
NCBI-ProteinID: XP_017622413
Position
2:complement(5888458..5892817)
AA seq 722 aa
MSSNYQILDNRPIDQWKVTELKEELKRRKLITRGLKEELVRRLDEAVRLERENAETEEDN
GFNSDPQPTDEGGIEKAMPVTSETVKDDVDHSGSKIKESGVKVHVDINESAAALGHEGVQ
GSDSLVEKELVSETTTIQTEITVTKNVVSEVPSTEKESSGKNENVNTDIEVENEDSKLQF
KTDDPKPRLENEGPKPELENEGSKPEVESEGLKPEGENDDPKGQLQCVGSKPQLDLEESK
VQLENEGLKAPHEDDVRDSSAPNIQVSEVSPDLGFQVKSDSISTDSVSNNEKIELKDNIL
ADNVKLDLDVVKPEMVEPSSSNVVPISGESHPMDVEDPPENKAPVDERDDKNVTNVDIGN
KNDSAEMAYSEKLNLDRSSGDDSMEEDVLESKQIDSKCSTDEMGDKSEKNRAPIVKEKSP
VGVLRDDLSIDKKDTLVENKSRSFVPAEKRKLHDQEPVGNNELSKRRKWNSDNIKVPEHQ
GNLAPTTTPKDTAQPAALRRNFSRSDSTASEGTPKERVVPPSQNAPTTSLRIDHFLRPFT
LKAVQELLGKTGTVTSFWMDHIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVADF
VDPQEVKTRLDAPPQTSTTPGTSGSTAPQAQPASQPQPSPRQQVSRQQHPPPSVLPPPPP
LSNPPPVRERLPLPPPPAEKVDPPIVTLDDLFWKTKAIPRIYYLPLSDEQVAAKQAAHGR
NI
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgtcatcaaattatcaaatacttgacaatagaccaattgatcaatggaaggttacagag
ttgaaagaagaacttaagaggcggaaactgataactcggggcttgaaagaggagttggta
agacggttggatgaggccgttagattggaaagggaaaatgctgaaactgaggaagataat
ggttttaattctgatccccagcctacagatgagggagggattgaaaaggcaatgccagtt
acttctgagacagttaaagatgatgtggatcatagtggcagtaagatcaaggagagtggg
gtaaaggttcatgttgacattaatgagagtgcagctgctttaggtcatgaaggagttcaa
ggaagcgacagcttggtggaaaaggagcttgtttctgaaaccaccactattcagactgag
ataacggttaccaagaatgtggtatctgaggtaccatctactgagaaagagagctcagga
aaaaatgagaatgtgaatactgatatcgaagtggagaatgaggattctaagctccagttc
aagactgatgatccaaagcccaggttggagaatgagggtccaaagcctgagttggagaat
gagggttcaaagcccgaggtggagagtgagggtctaaagcctgagggggagaatgatgat
ccaaagggccagctgcagtgtgtgggttcaaagcctcagctggaccttgaagagtcgaag
gtgcagctggagaacgagggtttgaaggctccccacgaagatgacgtgcgtgattcgtct
gctccaaacatccaggtatctgaggtcagccctgatttagggtttcaagtaaaatctgat
tctatttctactgattctgtctcaaataatgaaaagattgaattaaaggataatatactt
gctgataatgtcaaattagacctagatgttgtaaagccagagatggtggaaccatcatcc
agcaatgttgttccaattagtggtgaatcacatccaatggatgttgaagatccgcctgag
aacaaggcacctgttgatgagagagatgacaagaatgttacaaatgtagacatcggtaat
aaaaatgacagtgctgagatggcatactcagaaaaattaaatttggatagaagttctggt
gatgactctatggaggaggatgtgcttgagagtaaacaaattgattcaaaatgtagtact
gatgaaatgggagataagagtgagaagaatagagcacctattgtcaaggagaaaagtcct
gttggtgttttaagagatgatttatctatagataaaaaggacaccttggttgagaataag
agccggtcttttgttcctgctgagaaaagaaagcttcatgatcaggaacctgttgggaac
aatgagctttctaaacggcgtaaatggaattctgacaatataaaagttccagaacatcaa
ggcaatcttgcgcccaccacaacacctaaagacaccgctcagcctgctgctttgagacgt
aacttctctagatcagactcaacggcaagtgaaggtacaccaaaggaacgtgttgttccc
ccttcacaaaatgctccaaccacttccctcagaattgatcattttcttcgcccttttacc
ttgaaagctgtacaagaacttctagggaaaactgggactgtaacaagcttctggatggac
catattaagacccattgctatgttacatattcatctgtagaagaagcaatagagacacga
aatgctgtttacaacctacaatggccacctaatggtggacgcctattggtggctgacttt
gttgatccccaggaagttaaaacccggcttgatgctccaccacagacttcaactactcct
gggacttctggttctactgctcctcaagctcaacctgcttctcagccccagccctctcca
cgtcagcaggtttctagacagcagcatccaccgccttctgtacttcctccaccaccgcct
ttgtctaaccctccaccagttagagaaaggctccctcttcctccgccacctgcagagaaa
gtagatcctcctattgtcactctggatgatctattttggaaaaccaaagcaattcctcgt
atctactatttgcctttgtctgatgaacaagttgcagcaaagcaagcagcacatggcaga
aacatctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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