KEGG   Gossypium arboreum (tree cotton): 108467239
Entry
108467239         CDS       T05776                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21-like
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:3.6.4.13]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108467239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gab03041]
    108467239
Spliceosome [BR:gab03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    108467239
 Complex C
   U5 SnRNP specific factors
    108467239
SSDB
Motif
Pfam: DEAD Helicase_C ResIII HEM4
Other DBs
NCBI-GeneID: 108467239
NCBI-ProteinID: XP_017623317
Position
2:complement(2004608..2006998)
AA seq 671 aa
MNPPKPVFFTKVQRQHLSLQRRLEDLRRSNDTANNTSYSHSAKPSSDSYDRRDRERQRER
DRESDRRNREREREEEAKARERARLDKLAEREREKELDKLAAIKKQYLGSKKPKKRVIKP
SEKFRFSLDWENTEDTSGDINSLYRNPHEALLLFDRGFRAGMDRRDQKKLAAKNEEMREE
IRKKEGVEEKPEEAVVQRLKEAAANTYDTFDMRVDKHWSEKKLEEMTERDWRFFREDFNT
SHEGSKIPRPMRSWSESKLSSELLKAVERVGYKKPSPLQMAAILLGLQQRDVIGIAETGF
GKTAAFVWPMLSYISRLPPSEENEAEGPYTVVMAPTRELAQQIEDETMKFAHYLGIKVVP
IVGDQSIEEQRFRIRQGCEVVIAMPGRLLDCLERRYAVFNQCNYVVLDEADRMIDTGFEP
QVVGVLDATPSSNLKPENEDEELDEKRIYRTSYMFSATMPPAVERLARKHLRNPVVVTIG
TAGKATDLISKHVIMMKESEKFPRLQKLLDDLGDKTAIVFVNTKKNADTISKNLDKAGYK
VTTLHGGRSQEQREISLDGFRAKRFNVLVATDVAGREIDIPDVANVINYDMPNSIEMYTH
CIRRTGRADKTGLATTFLTLHDTDVFFDHKQMLVQSGSPVPPELAKHEASKFKPGTIPDR
PPRRNDTVFAH
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgaatcctcctaaacccgtcttttttaccaaagtccaacgccaacacctttcgctccag
cgccgcctcgaagacctccgccgttctaatgacaccgccaacaatacctcttattcccat
tctgctaagccctcctccgactcctacgaccgccgcgaccgcgaacggcagcgggagagg
gatcgcgaatccgaccggaggaaccgtgaacgtgagagggaggaggaagccaaggctcga
gagcgggcgcggttggataagctagctgagagggaaagggaaaaggaattggataagcta
gctgcaattaagaagcagtacctcggatccaaaaagcctaaaaagagggttattaaacct
agcgagaaatttaggttttctctcgattgggagaacaccgaagatacttccggagacatt
aattctttgtacagaaaccctcacgaagcactgcttttgtttgaccgagggtttagggct
ggaatggatcgcagggaccagaaaaagctggccgccaaaaatgaggagatgagagaagag
attagaaaaaaagaaggggttgaagagaagccggaggaagccgtggtgcagaggttaaaa
gaagctgcagctaatacttacgatacattcgatatgagagttgataagcattggtctgaa
aagaagcttgaagaaatgactgaacgtgactggaggttttttagggaagatttcaacact
tcccatgaagggtcgaagattccacggccaatgaggagttggagtgagagtaaattgagt
tccgagttgttgaaagctgtggagagagtagggtataagaagccttccccgttacagatg
gctgcgattcttctaggattgcagcaaagggatgtgattgggatcgccgagacaggattc
ggtaagactgctgcttttgtttggccaatgctttcttatatttctagattacctcctagt
gaagagaatgaagctgaggggccatacactgttgttatggccccaactcgtgaacttgct
caacaaattgaagatgaaactatgaagtttgcgcattatttgggtattaaggtcgttcct
attgttggtgatcagtcaatagaggaacaacggtttaggattagacaagggtgtgaggtt
gttattgctatgcctggtcggttgctggattgtttagagaggcggtatgctgtcttcaat
cagtgtaattatgtggttcttgatgaggctgataggatgatagatacgggttttgagccc
caagttgtgggtgtattggatgctacgccatctagtaatttgaaaccagagaatgaagat
gaggagctagatgaaaaaaggatatataggactagttatatgtttagtgctacaatgcct
ccagctgtggagcggctagctaggaagcatttgaggaatcctgttgtggtcactattggt
actgctggaaaggctactgatttaatttctaaacatgtgataatgatgaaggaatcagag
aagtttccaagattgcagaaattgcttgatgatcttggggacaagacagcaatcgtgttt
gtcaatactaagaagaatgctgatactatttctaagaatctggataaggctggttataag
gtaacaactttgcatggtggaagatcgcaggagcagagggaaattagccttgacggtttt
agggccaagagattcaatgttcttgttgctacagatgttgcagggcgtgagattgatatt
cctgatgtggctaacgtcattaactatgatatgccgaatagtattgaaatgtacacacat
tgtattagaagaacaggacgtgcagacaaaactggtctggccacaacatttttgactctc
catgacactgatgtcttctttgatcataagcagatgcttgttcaaagtggcagccctgtc
cctcctgagctggcaaagcatgaagcttctaagtttaaaccaggaacaattcctgataga
cctcctaggcgcaatgacactgtttttgctcactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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