KEGG   Gossypium arboreum (tree cotton): 108467409
Entry
108467409         CDS       T05776                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108467409
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108467409
   03036 Chromosome and associated proteins [BR:gab03036]
    108467409
Enzymes [BR:gab01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     108467409
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     108467409
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     108467409
Chromosome and associated proteins [BR:gab03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    108467409
SSDB
Motif
Pfam: DEAD Helicase_C CMS1 TFIIA DUF863
Other DBs
NCBI-GeneID: 108467409
NCBI-ProteinID: XP_017623498
UniProt: A0A0B0MGL8
Position
3:4587424..4592187
AA seq 495 aa
MNNRGRYPPVLGRGRGANANPSFQSRPEQPQYAQRNLVQNHHHFQQQQHHHLQQQQHQHQ
QQWLRRNQLPGGNDSTVADEVEKTVQSEAVDSSSQDWKARLKLPPSDTRYKTEDVTATKG
NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAL
EKIDQDNNVIQVVILLPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPV
HLLVGTPGRILDLAKKGVCILKNCSMLIMDEADKLLSPEFQPSLEQLLRFLPPKRQILMF
SATFPVTVKDFKDRYLKKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQ
SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR
GIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE
IKQIPPHIDQAIYCR
NT seq 1488 nt   +upstreamnt  +downstreamnt
atgaataatagagggaggtatccaccggtgctcggccgtggccgcggagcgaacgcgaac
cctagcttccaatcgaggccggagcaaccgcagtatgcgcagagaaatttggtgcagaat
catcatcattttcaacaacagcaacatcatcatctgcaacagcaacaacatcaacatcaa
cagcagtggctcagacgaaaccaattgcccggcggaaatgactccactgtcgccgatgag
gtcgagaagaccgtacaatctgaagccgtcgactcaagttcacaagattggaaggcaagg
ctaaagctaccaccatcagatacacgctacaaaacggaggatgtgacagctaccaaagga
aatgaatttgaagactactttctgaaacgtgaacttcttatgggaatatatgagaaggga
tttgaaagaccatctcctattcaggaagagagtattcccattgctttaactggaagtgat
attcttgctagagccaaaaatggaactgggaaaactgcagcattttgcattcctgcattg
gaaaaaattgaccaagataacaatgttattcaagttgttatacttcttccaacgcgagaa
cttgctcttcagacatcacaagtttgtaaggaactggggaagcatttacaaattcaagtt
atggtcacaacaggaggtaccagtctcaaggatgatattatgcgattgtatcaaccggtc
catttactggttggaacccctggcagaatactagaccttgctaaaaagggtgtttgcatt
ttgaaaaattgttcaatgcttatcatggatgaggcagataaacttttgtctccagagttc
caaccttctctagagcagctgctacgttttcttcccccaaaacgtcaaattttgatgttt
tctgccacatttcctgttaccgttaaggactttaaagacagatacctaaagaaaccttat
attattaatcttatggatgagcttactctgaagggtattacacaatattatgcctttgtg
gaagaaagacagaaagtccactgcctaaacactcttttctctaagctgcaaataaaccaa
tcaatcattttctgcaactctgtgaatcgggtggaactgttggcgaagaaaattacagag
cttggctactcatgcttttatatccatgcaaaaatgcttcaggatcatcgtaacagagta
tttcatgatttccgcaatggtgcatgcaggaaccttgtttgtactgatcttttcacaagg
ggtatagatatccaagctgtgaatgttgttataaacttcgacttccccaagaactcagaa
acataccttcatagggttggtcgatcgggaaggtttggtcatcttggattagcagtgaat
ttgatcacttacgaggaccgctttaacttgtataggattgaacaagaacttgggaccgaa
attaagcaaatccctcctcatattgatcaggctatttactgccggtga

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