KEGG   Gossypium arboreum (tree cotton): 108475900
Entry
108475900         CDS       T05776                                 
Name
(RefSeq) DNA damage-binding protein 1a
  KO
K10610  DNA damage-binding protein 1
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03420  Nucleotide excision repair
gab04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108475900
  09124 Replication and repair
   03420 Nucleotide excision repair
    108475900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gab04121]
    108475900
   03400 DNA repair and recombination proteins [BR:gab03400]
    108475900
Ubiquitin system [BR:gab04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     108475900
DNA repair and recombination proteins [BR:gab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      108475900
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      108475900
SSDB
Motif
Pfam: MMS1_N CPSF_A Lgl_C
Other DBs
NCBI-GeneID: 108475900
NCBI-ProteinID: XP_017633367
Position
5:42189250..42197517
AA seq 1088 aa
MSTWNYVVTAHKPTNVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTAQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDSETSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDARHVKTYEVALKEKDFVEGPWAQNNLDNGADLLIPVPPPLCGVLIVGEETIVYC
SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAVVFIGSSYGDSQLIKLNLQPDAKGSYVEVLERFVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSSSVRLVSSTSRELR
NEWHAPSGYSVNVATANATQVLLATGGGHLVYLEIGDGTLTEVKHAQLEYEISCLDINPI
GENSNYSHLAAVGMWTDISVRIFSLPELNLITKEQLGGEIIPRSVLLCSFEGTSYLLCAL
GDGHLLNFQVNMTNGELTDRKKVSLGTQPITLRTFSSKNTTHVFASSDRPTVIYSSNKKL
LYSNVNLKEVGHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICH
QEQSRTFAICCLKNQSSADESEMHFIRLLDDQTLECISTYPLDTFEYGCSILSCSFSDDT
NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN
QKIQLYKWMLREDGSREIQTECGHHGHILALYVKTRGDFIVVGDLMKSISLLIYKHEEGA
IEERARDYNANWMSAVEILDDDTYLGAENNFNLFTVRKNSEGATDEERGRLEVIGEYHLG
EFVNRFRHGSLVMRLPDSEVGQIQTVIFGTVNGAIGVIASLPHDQYVFLEKLQSNLRKVI
KGVGGLSHEQWRSFNNEKRTAEAKNFLDGDLIESFLDLSRGKMEEVSKGMGVSVEELSKR
VEELTRLH
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgagtacgtggaactacgtcgtaaccgcacacaaacctaccaacgtcacccactcctgc
gtcggcaacttcaccagccctcaggagctcaatctcatcgttgcgaaatgtactcgtatt
gaaattcatttgcttactgctcaaggattacagcctatgttggacgtgccaatatacggg
agaattgcgactcttgaacttttccgtccacatggtgaagcacaggattttctgtttatt
gcaacagaaagatacaaattttgtgtccttcaatgggattccgagacatcagagcttatt
acaagagctatgggggatgtttcagatcgtattggtcgaccaacagacaatggacagatt
ggcataattgatcctgattgtaggttaattgggcttcatctatatgatgggttgtttaag
gttattccttttgataacaaagggcaacttaaagaagcatttaatataaggcttgaggaa
cttcaagtattggatatcaagtttctctatggttgctcaaagcctacaattgtagttcta
taccaggataataaagatgcgcgccatgttaaaacatatgaggtggctttaaaggagaag
gactttgttgagggaccatgggcccaaaacaatcttgacaacggagccgatttgctcata
cctgtacccccacctctctgtggtgtccttattgttggggaagagacaattgtctattgc
agtgccaatgcattcaaagcaattccaatcagaccttcaattacaaaagcctatggaaga
gttgatgctgatggatcgaggtatttgcttggcgatcatgctggccttcttcacctgctt
gtcataacccatgagaaagagaaggtcactggactcaagatcgaactcttgggagaaaca
tctattgcatctacaatatcttatcttgataacgcagttgtctttattggttcaagttat
ggtgattcacagctgataaagctaaatctacaacctgatgcaaaaggttcttatgtggaa
gttttggaaaggtttgtcaatctggggcctattgttgacttttgtgtggtcgaccttgag
agacaagggcagggtcaagttgttacttgctctggagcttacaaagatggttctcttcgt
gtagttcggaatggaataggaattaatgaacaggcatcagtagaacttcaaggtatcaaa
ggaatgtggtcattgagatcctcaacagatgatccatttgacacctttctggttgttagt
tttatcagcgagacacgcattttggcaatgaatcttgaggatgagttggaagaaacagag
attgagggatttaattctcaagtgcagactttgttctgccatgatgctgtttacaatcag
cttgtacaggttacgtctagctctgtaaggcttgtgagttcaacatctagagagctacgc
aatgaatggcatgctccatctgggtattcggtcaatgttgccactgccaatgctacccag
gttttactagcaacaggagggggccatttggtttatttggaaattggtgatggcacatta
acagaagtcaaacatgctcagttggagtatgaaatctcatgtcttgacattaatccaatt
ggtgagaactctaactacagtcatctggctgctgttggaatgtggacggatataagtgtg
aggatattttcgctccctgaactgaatctcatcacaaaggagcaattgggaggagagatt
attcctagatctgttcttctttgctcttttgaagggacctcttacttgttatgcgccctt
ggtgacggtcatctcttgaattttcaagtgaacatgactaatggtgaattaacagataga
aaaaaggtttctcttgggactcaacccataacgcttcgtactttctcctccaagaatacc
acccatgtatttgcctcttcagataggccaactgtcatttatagtagtaacaagaagtta
ctctatagcaatgtcaatttgaaggaagtcggtcacatgtgcccttttaactctgctgct
tttccagacagcctcgcaattgcaaaagaaggtgaacttactataggcacgattgatgat
attcagaagcttcatatccgcactatcccacttggggagcatgcacgtcgcatctgccat
caagaacagtctcggaccttcgcaatatgttgtttgaaaaaccagtctagtgctgacgaa
tctgaaatgcattttattcgcctgttagatgatcaaaccttggaatgtatctcgacttac
cctcttgatacttttgagtatggttgctccattcttagctgttcattctcagatgacact
aatgtatattactgtgttgggactgcatatgttttgccagaagaaaatgagcccactaag
ggccgtatactggtttttattgttgaagatgggaagttacagcttattgctgaaaaggaa
actaagggagccgtttactctttaaatgctttcaatggcaaactcctagctgctattaat
caaaaaattcaactatataagtggatgcttcgagaggatggctcccgtgaaatacaaact
gaatgtggacatcatggccacatacttgctctctacgtgaaaactcgtggggattttatt
gttgttggtgatttgatgaaatcaatttcattgttaatctacaagcatgaggaaggtgcg
atagaggaacgagcccgtgactacaatgcaaactggatgtcggcagttgaaattcttgat
gatgatacttatttaggtgctgaaaacaacttcaatctgttcactgttcggaagaacagt
gaaggtgccactgatgaggaacggggccgtcttgaggtgattggtgagtatcaccttggg
gaatttgtgaataggttccgtcatggttcccttgtgatgcggttgccagattcggaagtg
ggccagattcaaaccgttatttttggcacagtcaatggtgcaattggcgtgattgcttca
cttccgcatgatcagtatgtgtttctggagaagctgcaatcgaacttaaggaaggtgata
aagggcgtgggagggttgagccatgaacaatggaggtcattcaacaatgagaagagaact
gcagaagccaaaaactttttggacggagacttgatcgaatcattccttgatctgagccgt
gggaaaatggaggaagtttctaaaggaatgggagtttctgtggaggagctgtccaagaga
gtggaggaactgacgaggttgcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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