KEGG   Gossypium arboreum (tree cotton): 108476195
Entry
108476195         CDS       T05776                                 
Name
(RefSeq) pre-mRNA-processing factor 19-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03040  Spliceosome
gab04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108476195
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108476195
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gab03041]
    108476195
   04121 Ubiquitin system [BR:gab04121]
    108476195
   03400 DNA repair and recombination proteins [BR:gab03400]
    108476195
Enzymes [BR:gab01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108476195
Spliceosome [BR:gab03041]
 Complex B
  Other components
   Prp19 complex
    108476195
 Complex C
   Prp19-CDC5 complex
    108476195
Ubiquitin system [BR:gab04121]
 Ubiquitin ligases (E3)
  U-box type E3
   108476195
DNA repair and recombination proteins [BR:gab03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    108476195
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 U-box zf-Nse WDR54 WD40_like PAS_11 V_ATPase_I_N
Other DBs
NCBI-GeneID: 108476195
NCBI-ProteinID: XP_017633810
UniProt: A0A0B0NH89
Position
5:43046478..43052107
AA seq 519 aa
MNCSISGEVPEEPVVSKKSGLLYEKRLIERHIADYGKCPVTGEPLTMEDIVPVKTGKIVK
PRSLTAASIPGMLGMFQNEWDALMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQAPLPASAVTAVSNGKRASEEEDMGPGAKRMRPGVSDSIIAELTEC
NAALSQQRKKRQIPPTLAPIDALERYTQLSSHPLHKTNKPGITSIDINLLKDIVATGGID
SNAVLFGRTSGEILSTLSGHSKKVTSVKFVAHNDVFLSGSADKTVRIWQGSEDGNYNCRH
ILKDHTAEVQAVTVHATNNYFVTASLDATWCFYDLSSGLCLTQVEDPTNSMGYTSAAFHP
DGLILGTGTIGSTVRIWDVKSRGNVANFDGHTGAVTAISFSENGYFLATAAHDGVKLWDL
RKLKNFRSFELYDQDTPTNSVDFDHSGSYLAIAGSDIRVYQVGSVKAEWNCIKTLPDLSG
TGRATCVKFGPDARYLAVGSMDRNLRVFGLPEEDASTES
NT seq 1560 nt   +upstreamnt  +downstreamnt
atgaactgttcaatctccggtgaggttccggaagaacccgtcgtctccaagaaatccggc
ttgctttatgagaaacgcttaatcgagaggcacattgcggactatgggaagtgtccggtt
acaggggaaccgcttaccatggaggacattgtcccagtcaaaaccggcaagattgtgaag
cccagatctttaacagcagctagcatcccagggatgcttggaatgtttcagaatgaatgg
gatgctttgatgctatccaattttgcattggagcaacagctgcatacagctaggcaagag
ctaagtcatgcactctaccagcatgatgctgcctgccgtgttattgcaagacttaaaaag
gaaagggatgaagccaggtcattacttgcacaagctgagaggcaggcacctttgcctgca
tctgcagttactgctgtgagcaatggaaagagagcttccgaggaagaagatatgggccct
ggtgcaaagagaatgcgtcccggggtttctgatagtattatcgctgagttaacagaatgt
aatgctgctttgtctcaacaacgtaaaaagcgccagatacctccaacactagctcccatt
gatgctttggagaggtatactcaactttctagtcatccccttcacaagacaaacaaacca
gggatcacttcaattgacatcaatcttttaaaggacattgttgccacaggtgggattgat
tcaaatgctgttttatttggtcgaacatctggggagatcttatcaacacttagtggtcac
tctaagaaggttacaagtgtaaaatttgtggctcataatgatgtatttttaagtggttct
gcagataagactgtacgcatttggcaaggttctgaagatggaaactacaattgtaggcat
attttgaaagatcatacagctgaggtgcaagctgtcacagtccatgccacaaataactac
tttgtaactgcttcgcttgatgcaacatggtgcttttatgatctttcctctggcttatgc
ttgacacaggttgaagaccctacaaattccatgggttatacatctgctgcatttcatccc
gatggtctcatccttggaacaggcaccataggatctaccgttagaatttgggatgtgaag
agtcggggaaatgttgctaactttgatggacacactggtgcagtaacagccatatctttt
tcggaaaatggttacttcctagcaactgctgcacatgatggtgttaagttgtgggatcta
cgtaaattaaagaatttccgttcttttgagttatatgatcaagacacgccgactaactct
gtggatttcgatcatagtgggagttaccttgcaattgcaggctcagatatacgagtttac
caagttggcagcgtcaaagcagaatggaattgcatcaaaactttacctgatttgtctggc
acaggtagagcaacttgtgtcaaatttggtcctgatgcaaggtacttagcagttggatca
atggatcgcaaccttcgggtatttggccttcctgaagaagatgcttcaacagaatcataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (25)   

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