KEGG   Gossypium arboreum (tree cotton): 108488393
Entry
108488393         CDS       T05776                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4-like
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03020  RNA polymerase
gab03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108488393
  09124 Replication and repair
   03420 Nucleotide excision repair
    108488393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gab03021]
    108488393
   03400 DNA repair and recombination proteins [BR:gab03400]
    108488393
Transcription machinery [BR:gab03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     108488393
DNA repair and recombination proteins [BR:gab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      108488393
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 108488393
NCBI-ProteinID: XP_017648160
Position
9:complement(9774237..9777731)
AA seq 139 aa
MMSGEEEENAAELKIGEEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSL
QYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAH
DDDAIERMLNDLSLIKKFE
NT seq 420 nt   +upstreamnt  +downstreamnt
atgatgtctggcgaagaggaagaaaacgctgctgagctcaaaattggagaagagtttttg
aaggcgaagtgtttgatgaattgtgaagtggctttaattctcgagcataagtatgagcag
cttcagcaaatgtctgacgatcccatgaatcaagtttcccaggtattcgagaagtcactg
cagtatgtaaaacgctttagccgttataaaaatccagatgctgtgagacaagttcgagaa
attctgagtagatatcagttagctgaattcgagctttgtgttcttggcaacctgtgtcct
gaaactgtggaggaagcaattgctatggtgccttccatcaagactaaaggacgggctcac
gacgacgatgccatcgagagaatgctaaatgacctttcccttatcaagaaatttgaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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