KEGG T01483: Glaag

Glaciecola sp. 4H-3-7+YE-5: Glaag_3842

Entry

Glaag_3842        CDS       T01483

Name

(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily

K03087

RNA polymerase nonessential primary-like sigma factor

Organism

gag Glaciecola sp. 4H-3-7+YE-5

Brite

KEGG Orthology (KO) [BR:gag00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gag03021]
    Glaag_3842
Transcription machinery [BR:gag03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Glaag_3842

SSDB

Motif

Pfam:

Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 7TMR-DISMED2

Other DBs

NCBI-ProteinID:

AEE24769

Position

4538325..4539308

AA seq 327 aa
MSHQNSATIELDLVDDIEEAVEKELVKAEKESEDTFKDIVSSKDAPSKNLDATQLYLGEI
GFSPLLSAEEEVYFSRRALKGDEASRQRMIVSNLRLVVKIARRYNNRGLALLDLVEEGNL
GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTSREL
AQKLDHEPTAEEIAEAVQRPVADVTKMLRLNERITSVDTPIGSDNDNVLLDIIADDNGHD
PEEDLQDKNVKLSIVGWLEDLNPKQREVLARRFGLLGYEPSTLEDVGVEIGLTRERVRQI
QVEALRRLKDMLGHKGLSLESLFNQLA

NT seq 984 nt +upstreamnt +downstreamnt
atgagtcatcaaaacagcgctaccatagaattagatcttgtcgacgacatcgaagaagcc
gttgaaaaagaattagtaaaagcagagaaagagtctgaagacaccttcaaagatatcgtc
tctagcaaagatgccccgagtaagaatctcgatgccacccaattgtacctcggtgaaatt
ggcttttctccactgctatcagcagaagaggaagtatacttttcacgccgagccctcaaa
ggcgacgaagcctcccgacaacgtatgatcgtcagtaacctgcgattagtcgtcaaaata
gcaagacgctacaacaaccgagggttggctctactcgacctagttgaagaaggtaattta
ggtcttatcagagcagtcgaaaaattcgatcctgagcgtggatttcgtttttctacctat
gcgacatggtggatacgtcaaacgattgaacgagcgataatgaaccaaactcgcactatt
cgtttacccattcatgtggtgaaagagctaaatgtttatttgcgtacttctcgcgagtta
gcacaaaagttagatcatgaacctaccgcagaagaaatcgccgaagcagtgcaaagacct
gttgcagatgtgacaaaaatgcttcgcttgaatgaacgtattacgtctgttgatacccct
atcggcagtgataatgacaatgtattgcttgacattattgctgatgacaatggtcacgat
cctgaagaagacttacaggataaaaacgtgaaattgagcattgtcggctggttggaagat
ttaaaccctaaacaacgtgaagtactcgcgagacgctttggtttgttgggttatgaacct
tcaacccttgaagatgtgggtgtagaaattggcttaacgcgagagcgcgttcgccaaatt
caagttgaggccctgcgtagactcaaagacatgttagggcacaaagggctaagcctagag
tctctgtttaatcagttggcttaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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