KEGG   Gemmatimonas aurantiaca: GAU_3018
Entry
GAU_3018          CDS       T00878                                 
Name
(GenBank) putative ribonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
gau  Gemmatimonas aurantiaca
Brite
KEGG Orthology (KO) [BR:gau00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gau03016]
    GAU_3018
Enzymes [BR:gau01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     GAU_3018
Transfer RNA biogenesis [BR:gau03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    GAU_3018
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC DNA_pol_A_exoN CbtB
Other DBs
NCBI-ProteinID: BAH40060
NITE: GAU_3018
UniProt: C1AC33
Position
complement(3556795..3557961)
AA seq 388 aa
MPAQAPHYLDTVETVDTFLAGLNGVRAIALDTEGASFHRFVDRIYLLQLSTADHEAVIDP
LPIGTPTRLGVLLEDPQVEVVLHDADYDLRLLRQDYGWRVTHLFDTRVAAQLLGIRAFGL
AALLEQFFGIKLDKKHQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSW
AQEEFTRAEGTRWEPEAPDTSFLRLKGARDLNRRELARLRELVRWRDGIAAELDRATFRV
AGNEVLLDLARQAPATRDALFAVKGFPRGMSESRAQEALQSIVRGNAVPDAELPRFPKAT
RWDREPDFDERVARLKTVRDAAATDLNLDPGVLCSRDRMEAVVRRKPRHVDDLAELPELR
RWQVEVLGPAFVKALASYAGDDSPYKPG
NT seq 1167 nt   +upstreamnt  +downstreamnt
atgcctgctcaagctcctcactacctcgacacggtcgagaccgtcgacacctttcttgct
ggcctcaatggcgttcgggcgatcgcgctcgacaccgaaggagccagctttcatcggttt
gtcgaccgcatctatctgttgcagctctccacggcggatcacgaggccgtgatcgacccg
ctgccgatcggtacccccacacggctcggtgtgttgctcgaagacccgcaagtcgaggtc
gtgctccatgatgccgactacgatctgcgtcttctccgccaggactacgggtggcgtgta
acccacctcttcgacacgcgggtggcggcgcagttgctcggcattcgtgcgtttgggttg
gccgcactgctcgagcagttcttcggcatcaagctggacaagaaacatcagcgtgccgac
tggagcatgcgcccgctgacggcagacatgctcgactatgcggcccacgacacgcgccac
ttgctcgggctgcgtgaccgtctgcatgacgagctggtgcagaaggggcggtggagctgg
gcgcaggaagaattcacccgcgcggaaggcacgcgatgggagcccgaggcacctgatacc
agttttctgcggctcaagggtgcacgcgatctcaaccgtcgcgaactggcacgactgcgt
gaactggtacggtggcgggatggcattgcggccgagctcgatcgtgccacgttccgcgtg
gccggcaacgaggtgctgctcgatctggcacgtcaggcgccggccacccgcgacgcattg
ttcgcggtcaagggattcccgcgcggcatgtcggagtcgcgcgcgcaggaggccctgcag
tccatcgtgcgtggcaacgcggtccccgatgcggaactgccccggtttcccaaggcgaca
cgctgggatcgcgaacccgattttgacgagcgggtggcgcgcctcaagacggtccgggac
gccgcagccaccgacctcaatctcgatcccggcgtgctctgctcgcgtgatcgcatggag
gccgtggtgcgccggaagccacgtcatgtcgacgacctggcggaactccccgagttgcgt
cgctggcaggtggaagtgctcggcccggcctttgtgaaggccctggccagctacgcgggc
gacgattcgccgtacaagccggggtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (34)   

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