KEGG   Gordonia alkanivorans: C5O27_08030
Entry
C5O27_08030       CDS       T05876                                 
Symbol
lysS
Name
(GenBank) lysine--tRNA ligase
  KO
K04567  lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Organism
gav  Gordonia alkanivorans
Pathway
gav00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:gav00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    C5O27_08030 (lysS)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:gav01007]
    C5O27_08030 (lysS)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gav03016]
    C5O27_08030 (lysS)
Enzymes [BR:gav01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.6  lysine---tRNA ligase
     C5O27_08030 (lysS)
Amino acid related enzymes [BR:gav01007]
 Aminoacyl-tRNA synthetase
  Class II (A)
   C5O27_08030 (lysS)
Transfer RNA biogenesis [BR:gav03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Multi-aminoacyl-tRNA synthetase complex (MSC)
    C5O27_08030 (lysS)
 Prokaryotic type
   Other AARSs
    C5O27_08030 (lysS)
SSDB
Motif
Pfam: tRNA-synt_2 tRNA_anti-codon tRNA-synt_2d
Other DBs
NCBI-ProteinID: AZZ81013
UniProt: A0A3T0UXX1
Position
1752529..1754112
AA seq 527 aa
MTGPDSVRGVSDSPTSTASTAAETTTDADDQTPEQLRIRREKRERILSEGREAYPVSIPR
THSLGEIRAAYPDLEAGTETGQHVGVSGRVIFLRNKGKLCFATLQEGDGTQLQAMISFNG
VGEDALGRWKSDVDLGDIVFISGEVISSRTGELSVMADGWQMASKSLRPLPVAHKDMNEE
TRVRQRYVDLIMRPEARETARTRIKVMAELRAALGRRGFLEVETPMLQTLHGGAAARPFV
THSNAFDMDLYLRIAPELFLKRCVVGGIERVFEINRNFRNEGADSTHSPEFAMLETYQAY
GTYDDSAKMIRELVQEVSQAALGTQTPTMPDGSTYDLSGEWTSLEMYPSLSEALGEEIVP
AGNPGETTVEQLLAIAKRVGLEVPKDKGYGHGKLVEELWEHMVGEKLSEPVFIRDFPVET
SPLVRSHRSVKGVVEKWDLYVRGFELATGYSELVDPVIQRERFVDQARLAAAGDDEAMVL
DEEFLAAMEYGMPPTTGTGMGIDRLLMALTGLGIRETILFPLVKPRT
NT seq 1584 nt   +upstreamnt  +downstreamnt
gtgaccggccccgatagtgtgcgtggggtgagtgacagcccgaccagcaccgcctccacc
gcggccgagacgaccacggacgccgacgaccagactcccgaacagctgcgaatccgacgc
gagaagcgcgagcgcatcctgtccgagggtcgcgaggcgtatccggtctcgattccgcgc
acccactctctcggcgagatccgcgccgcctaccccgatctcgaggccggcaccgagacc
ggtcagcacgtcggtgtctccgggcgcgtcatcttcctgcggaacaagggcaagctgtgc
ttcgcaaccctgcaggagggcgacggcacgcagctccaggcgatgatcagcttcaacggc
gtcggcgaagatgcgctgggccgctggaagtccgatgtcgacctcggcgacatcgtcttc
atctccggtgaggtgatcagctcccgtaccggtgagctgtcggtgatggccgacggctgg
cagatggcgtcgaagtcgttgcggccgttgcccgttgcccacaaggacatgaacgaggaa
acccgggtgcgccagcgctacgtcgatctcatcatgcggccggaggcccgcgaaaccgcc
cgcacccgcatcaaggtgatggccgaactccgtgccgcactgggccgtcggggattcctc
gaggtcgagaccccgatgctgcagacgctgcacggcggtgccgcggctcgcccgttcgtc
acgcactccaacgccttcgacatggacctgtacctgcgcatcgcgccggagttgtttctc
aagcgctgcgtggtcggcggcatcgagcgtgtcttcgagatcaaccgcaacttccgcaac
gagggcgccgactccactcactcgcccgagttcgcgatgctggagacctatcaggcctac
ggcacctacgacgactccgcgaagatgatccgcgaactcgtgcaagaggtttcgcaggcc
gcgctgggtacccagaccccgaccatgcccgacggttcgacctacgacctctccggcgag
tggacctccctcgagatgtacccgtcgctgtcggaggcgctcggcgaggagatcgtgccc
gccggcaatccgggggagaccaccgtcgagcagctgctggcgatcgccaagcgcgtcggc
ctggaggttcccaaggacaagggttacggccacggcaagctcgtcgaggagctgtgggag
cacatggtcggcgagaagctgagcgagccggtgttcatccgcgacttcccggtcgagacc
tcgccgctggtgcgctcccaccggtcggtcaagggtgtggtcgagaagtgggacctctac
gtccgcggcttcgagctggccaccggctactccgagctcgtcgaccccgtcatccagcgc
gagcgcttcgtcgaccaggcccgcctggccgccgccggcgacgacgaggcgatggtcctc
gacgaggagttcctcgccgcgatggaatacggaatgcccccgaccaccggcaccggcatg
ggcatcgaccgcctgctgatggccctcaccggcctcggcatccgcgagaccatcctcttc
ccgctggtgaagccccgcacctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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