KEGG   Gordonia alkanivorans: C5O27_14300
Entry
C5O27_14300       CDS       T05876                                 
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
gav  Gordonia alkanivorans
Pathway
gav03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    C5O27_14300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gav03400]
    C5O27_14300
Enzymes [BR:gav01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     C5O27_14300
DNA repair and recombination proteins [BR:gav03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     C5O27_14300
    RecFOR pathway proteins
     C5O27_14300
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 AAA_16 TIP49 Mg_chelatase IstB_IS21 nSTAND3 RNA_helicase AAA_3 AAA_14 Zeta_toxin Resolvase AAA_18 Sigma54_activ_2 TsaE AAA_33
Other DBs
NCBI-ProteinID: AZZ82092
UniProt: A0A3T0V165
Position
3135337..3136425
AA seq 362 aa
MTGDPDDLEDREVNATPVRSDGDLDAGLRPRSLADFIGQPRVCEQLELVLHGAKGRGGTP
DHILLSGPPGLGKTSLAMIIASEMGAAIRVTSGPALERAGDLAAMLSNLVEGDVLFIDEI
HRIARPAEEMLYLAMEDFRVDVVVGKGPGATSIPLDVAPFTLVGATTRSGSLTGPLRDRF
GFTAHMEFYDPAELVRVLNRSAGILGMELRPDASEEIARRSRGTPRIANRLLRRVRDYAE
VRGDGSITVDVARAALKVYDVDELGFDRLDRAVLDALIRAFGGGPVGVSTLAVAVGEEPA
TVEEVCEPFLVRAGMIARTPRGRVATAAAWHHLGLTPPAGAMNASFGARPRDVGGESLFG
EL
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgaccggcgatcccgacgacctcgaggatcgcgaggtcaacgcgacaccggtccggtcc
gacggcgatctcgacgcaggcctgcgtccgcggtcgctggccgatttcatcggtcagccg
cgcgtctgcgagcagctcgaactcgtcctccacggggccaagggccgcggcgggaccccc
gaccacatcctgctgtccggtcctccgggactcggcaagacctcgctcgccatgatcatc
gcgtccgagatgggtgcggcgatccgggtgacatcgggtccggcactcgaacgcgccggg
gacctcgccgccatgctgtcgaacctcgtcgagggcgacgtgctgttcatcgacgagatc
caccgcatcgcccggcccgccgaggagatgctgtatctcgcgatggaggacttccgcgtc
gacgtcgtggtcggcaagggcccgggtgccacctcgatcccactcgacgtcgccccgttc
accctggtcggcgccaccacccgttccggctcgctgaccggcccgctgcgcgaccgcttc
gggttcaccgcgcacatggagttctacgaccccgccgaactcgtccgggtgctcaaccgg
tccgcgggcatcctcggcatggagctgcggcccgacgcctccgaggagatcgcgcgccgg
tcacgcggcacgccccgaatcgccaaccgcctgctccgacgcgtccgcgactacgccgag
gtccgcggcgacggctcgatcaccgtcgacgtcgcccgcgccgccctcaaggtctacgac
gtcgacgaactcggtttcgaccgactcgaccgcgccgtcctcgacgccctgatccgggcg
ttcggcgggggaccggtgggggtgtcgacgctggccgtggcggtcggcgaggagcccgcg
accgtcgaagaggtctgcgagccgttcctggtccgggccgggatgatcgcccgcacccca
cgtggccgagtcgccaccgcggcggcgtggcatcacctcggcctgacgccgcccgccggc
gcgatgaacgcctcgttcggcgcccgcccccgcgacgtcgggggcgagtccctgttcggc
gaactctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (28)   

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