KEGG   Gordonia bronchialis: Gbro_4769
Entry
Gbro_4769         CDS       T01102                                 
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
gbr  Gordonia bronchialis
Pathway
gbr03030  DNA replication
gbr03430  Mismatch repair
gbr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gbr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Gbro_4769
   03430 Mismatch repair
    Gbro_4769
   03440 Homologous recombination
    Gbro_4769
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gbr03032]
    Gbro_4769
   03400 DNA repair and recombination proteins [BR:gbr03400]
    Gbro_4769
Enzymes [BR:gbr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Gbro_4769
DNA replication proteins [BR:gbr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Gbro_4769
DNA repair and recombination proteins [BR:gbr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Gbro_4769
SSDB
Motif
Pfam: TerD RNase_T BRCT
Other DBs
NCBI-ProteinID: ACY23887
UniProt: D0L8D9
Position
5105105..5106877
AA seq 590 aa
MITGVGKSGWVLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATLLNPGCDPGPVHI
HNLTRDRLHGAPTFDVTMSPLQQMLAGRTMVAHNATFDHGFLVEEARRLGATLPIDHRLC
TVTLARRLQLDVPNVKLGTLATYWGIRQRAAHDARDDVRTLAEVFRRSLDLAETLGLRLP
VVACGVNSRAFPDKVTRVPCPWRDPGRFDPAVGLIQGTKVAITGPTTVPRTELARRLSDA
GLDVMNSVSGKTGIVIANPGSPDSRKLQRARLDGTPVLDEGTMLRLADHILPGTLKSAPE
TIEVVTVIHPPSSPPTRQPARRSGPWASRRVLILGGSHLEATVMRSRIVQLGAVPAINLT
AAVTDVLLLDGGDGDPRMPRIRERALTILEMHHVDAALGVDPDPGTAGVDTAGQGSAAAM
MSPGEVIDLPSDVAQFTVNVSWSAEAEQPPEVDVVAFELDTANRVLTDDEFVFYNQPASP
DGAVRLTIDGSCEQGISIDLRQVPPDVARIAVGAAIESQTFGDLGALSVSVDTEEAGIAT
AVLDAATTERSMIIAEIYRRGDVWRLRMIGQGYDDDLGAFAVRYGVEVDD
NT seq 1773 nt   +upstreamnt  +downstreamnt
gtgatcacgggtgtcggaaagtccggttgggtattggtcgacgtcgagaccaccggaacc
aatgcgcgtcgtgatcgggtcctcagtctggcgacgatgactctcgactacgacggacgc
gtcgaagacgagtacgcgacgctgctcaaccccgggtgtgaccccggtccggtgcacatt
cacaacctgactcgcgaccgcctgcacggagccccgactttcgacgtcaccatgtcgccg
ctgcagcagatgctggccgggcgcacgatggtcgcccacaacgcgacgttcgatcacggg
ttcctggtggaagaggcacgacggctcggcgcgacgctcccgatcgatcaccgcctgtgc
accgtcacgctcgctcgccgactccaactcgacgtacccaacgtcaagctgggcacgctc
gcgacgtactggggtattcggcagcgcgccgcccacgacgcgcgcgacgatgtgcgcacc
cttgccgaggtgttccgccgcagtctcgacctcgccgagacactcggtctgcggctgccc
gtcgttgcctgcggtgtcaactcgcgcgccttcccggacaaggtcactcgcgtgccctgc
ccgtggcgggatccgggtcggttcgatccggcggtgggcctcatccagggcaccaaggtg
gccatcaccggtccgacgacggtcccgcgcaccgaactggcacggcggctgtcggatgcc
ggcctcgacgtcatgaacagtgtcagcggcaagaccggcatcgtcatcgcgaacccgggc
agcccggattcacgaaagctgcagcgcgcgaggctcgacggtacaccggtgctcgacgag
ggcaccatgctccgcctcgccgaccacatacttcccggcacgctgaagtcggccccggag
accatcgaggtggtcaccgtgatccacccaccctcgtcgccgccgactcgacagcccgcc
cgacggtcgggcccatgggcttctcgccgcgtcctcatcctcggtggcagccacctcgag
gccaccgtgatgcgttcgcggatagtgcaattgggtgcggtaccggcaatcaatctcacc
gccgccgtcaccgacgtcctccttctcgacggcggtgacggtgacccccggatgccgcgg
attcgtgaacgtgcactcaccatcctggagatgcaccacgtcgacgccgcgctcggcgtc
gaccccgatcccggcaccgctggagtcgacaccgccgggcagggctcggctgcggcgatg
atgtcgccgggcgaggtgatcgacctgccgtccgacgtcgcgcagttcaccgtcaacgtg
tcctggagcgcggaagccgaacaaccgcccgaggtcgacgtcgtcgccttcgagctcgac
acggccaaccgggtgctcaccgacgacgagttcgtcttctacaaccagccggcaagtccg
gatggtgccgtccggctgaccatcgacggcagttgcgagcagggcatctccatcgatctc
cggcaggtcccgccggatgtcgcccggatcgcggtgggcgcggcgatcgaatcgcagacc
ttcggtgacctgggcgcgctctcggtcagcgtcgacaccgaggaggccgggatcgccaca
gcggtgctggatgccgcgacgaccgaacgatccatgatcatcgccgagatctaccgacgc
ggagatgtgtggcggctccggatgatcgggcagggctacgacgacgacctgggcgcgttc
gccgtgcgctatggcgtcgaggtcgacgactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (27)   

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