KEGG   Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_0701
Entry
GbCGDNIH4_0701    CDS       T03156                                 
Name
(GenBank) Ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
gbs  Granulibacter bethesdensis CGDNIH4
Brite
KEGG Orthology (KO) [BR:gbs00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gbs03016]
    GbCGDNIH4_0701
Enzymes [BR:gbs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     GbCGDNIH4_0701
Transfer RNA biogenesis [BR:gbs03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    GbCGDNIH4_0701
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2
Other DBs
NCBI-ProteinID: AHJ65116
Position
complement(798426..799124)
AA seq 232 aa
MLHFIPSLSFFVSLSPVITQFMADKTIHLHRHDLPPSLDIGPIIAIDTETMGLNHHRDRL
CLIQISAGDGHAHLVQIVPERLGGKGADCPNLKRLLSNPGCVKLMHYARFDVGILQNALG
IAMSNVKCTKIAAKLVRTFTDRHGLKDLCRDLLGVEISKQQQSSDWGAPELTPEQMAYAA
SDVLYLHALWNRLEGLLIREDRLALAEACFAFLPARARLDYLGYDEPDIFSH
NT seq 699 nt   +upstreamnt  +downstreamnt
atgctgcattttatccccagcctttcatttttcgtaagtctcagcccggtgatcacgcag
ttcatggccgataaaaccattcatcttcatcggcacgaccttcccccttcattggatatc
ggccccattatcgccattgatactgaaacgatggggcttaatcatcaccgggaccggctg
tgcctgatccagatttccgccggagatggtcatgcacaccttgtgcagattgtgccggag
cgattgggcggcaaaggcgccgattgccccaatctcaaacggttgctcagcaatcctggc
tgcgtaaagctgatgcattacgcacggttcgatgtcggcattttgcagaacgcactgggc
atcgcgatgtccaacgtcaaatgcaccaagatcgccgccaagctggtccgtacctttaca
gatcgccatggcctgaaagatctgtgccgcgatcttctgggggtagagatcagcaagcag
cagcagagctccgattggggcgcacctgaactgacgccagagcagatggcctatgccgcc
tccgatgttctgtatctgcatgcactatggaaccggctggaaggattactgatccgggag
gataggcttgctctggctgaagcatgttttgcctttctgcctgccagagcacgactggac
tatctgggttatgatgagccggatattttttcgcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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