KEGG   Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_0803
Entry
GbCGDNIH4_0803    CDS       T03156                                 
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
gbs  Granulibacter bethesdensis CGDNIH4
Pathway
gbs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gbs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GbCGDNIH4_0803
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gbs03019]
    GbCGDNIH4_0803
   03016 Transfer RNA biogenesis [BR:gbs03016]
    GbCGDNIH4_0803
Enzymes [BR:gbs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     GbCGDNIH4_0803
Messenger RNA biogenesis [BR:gbs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GbCGDNIH4_0803
Transfer RNA biogenesis [BR:gbs03016]
 Prokaryotic type
  tRNA degradation factors
   GbCGDNIH4_0803
SSDB
Motif
Pfam: RNB CSD2 S1
Other DBs
NCBI-ProteinID: APG31114
Position
complement(931213..933651)
AA seq 812 aa
MARRLKPAKGSAAKGPSGGKAGRKSSRPSSQVVRPVSGHEPGTMPSREAIRRFVAEASGR
VGKREIAKAFGLGAADKLHLRDLLKDMASEGNLAPAGHKRFMPAGGSMLPHAKGSSHLPE
VAVILITGTDRDGDAVGRPAEWPREAGPPPSVLMHPEPRGRPALAPGEKVLARLRPIGHG
RYEGRTIKRLGGDTPRPILGVYRLSEPVTLVPRSTRTSHAARQMLARQNASTAQPEGRVV
PTDRRSKAEWLVPAGEEGGAEPGDIVRAMPLPHTGYGLKPARIIEKLGKIGDARSVSLIC
IETHDIPQIFPDEALSEARKARAVPLGKREDLRDISLITIDGEDARDFDDAVFAERADND
GFRLIVAIADVAHYVRPGSALDREAFKRGNSCYFPDRVVPMLPEALSNGWCSLRPDEDRG
CLFVEMMINAGGGKIRHRFGRGLMRSAARRTYEEVQQAHEAGDETLDALYGAYHALIKAR
TARGTLDLDLPERKVILNEAGSVDAIIPRPRLDSHRLIEEFMVLANVAAAEELERLHRPC
MYRVHAPPSDEKTEALRGFLDSFGISLPPAGQIHPRDLDHILKQVAGTEHAALINETMLR
SQSQAEYNPDNIGHFGLALSRYAHFTSPIRRYADLLVHRALIAGLKLGVGSLEDDEASRF
VDIAEHITATERRAAMAERDAIDRYLAAFMADRVGARFAARISGVTRFGLFITVEENGAS
GIVPISSLPDDFWIHDEREQALIGRNSRAVWRLAQSVTVRLAEATPITGGLVFNLLPGAS
SSASSRPDSTDRTNTQDRFSSRKRGSPGRSRR
NT seq 2439 nt   +upstreamnt  +downstreamnt
gtggcgcgtcgtctcaaaccggccaaaggatcagccgccaaaggaccatccgggggaaag
gcgggcaggaaatcctcccgcccatcctcgcaggtggtccgaccggtctccggccatgaa
cccggcacgatgccgagccgggaggccattcgccgcttcgtggcggaagcttccggccgg
gtcggaaagcgggagattgccaaggctttcggtctgggagccgccgataaactgcacctg
cgtgatctgctgaaagacatggcctcggaaggtaatctcgcccctgccgggcataagcgc
ttcatgcctgccggggggagcatgctccctcatgccaaagggagttcccatctgccggaa
gtcgccgtgatcctcatcaccggcacggatcgggatggcgacgcggtcggccgcccggcc
gagtggcctcgggaagccgggcctcccccctccgtcctcatgcacccggagcctcggggc
cgtccggcgcttgcacctggggaaaaagtgctggcccggctgcgcccgatcggccatggc
cgctatgaaggccgcactatcaagcggctgggtggcgatacaccgcgccccattctgggg
gtttaccggttgtcggaacccgtcaccctggtcccacgctcgacccgaacctcccatgcc
gcaagacagatgctggcacgacagaatgcctccacagcacagccggaaggcagggtggtg
ccgacagatcgccgctccaaggccgaatggcttgttcctgccggcgaggaagggggggcg
gaaccgggtgacattgtgcgtgccatgcctctgccccatacagggtacgggctgaaaccg
gcccggatcattgaaaagctgggcaagatcggggatgcccgctcggtcagcctgatctgc
atcgaaacccacgatattccccagattttccccgacgaggccctgtccgaagcccgaaaa
gcccgcgccgttccactgggaaagcgggaggatttgcgggacatttctctcatcaccatc
gatggcgaggatgcacgggacttcgacgatgccgtttttgccgaacgggcagacaatgac
ggattccgtctgatcgtggccattgccgatgtggcgcattacgtacgccccggctcggcc
ctggaccgggaagcgttcaaacgcggcaattcctgttacttcccggatcgcgtcgtgccg
atgttgccggaagcgctctccaatggctggtgcagcctgcgcccggacgaagatcgcggc
tgcctgttcgtggagatgatgattaatgccggcggtggcaagatccgccaccgcttcgga
cgcgggctgatgcgcagtgccgctcgccgcacctatgaggaggtgcagcaggcccatgag
gcaggcgatgagacactcgatgcgctctacggcgcctaccacgctctgatcaaggcccgc
actgcgcgcggtacgctcgaccttgatctgccggagcgcaaggtgatcctcaacgaggcc
ggatcagtagacgctatcattccgcgcccccgtctcgacagccaccggctgatcgaggaa
ttcatggtgctggccaatgtcgccgcagcggaggagctggaacggctgcatcgtccctgc
atgtatcgtgtccatgcaccgccgagcgacgaaaagaccgaggccctgcgcggttttctg
gacagtttcggcatttccctgcctcccgccgggcaaattcatccccgcgatctggaccat
attctgaagcaggtggccgggacggagcatgctgcgctgattaatgagaccatgctgcgc
agtcagtctcaggcagaatataatcctgacaatatcggccatttcgggctggcgctcagt
cgctatgcccatttcaccagcccgatccgccgctatgccgatcttctggtgcaccgtgcc
ctgatcgccgggctaaaactgggtgttggcagtctggaggacgatgaagccagccgcttc
gtcgacatcgccgagcatattaccgccaccgaacgccgtgcggccatggcggagcgcgat
gccatcgaccgttacctggccgccttcatggccgacagggttggcgcccgctttgccgcc
cgcatttccggtgtcacccgcttcggcctgttcatcacagtcgaggaaaacggtgccagc
gggattgtcccgatttcctctctccccgacgatttctggattcatgatgagcgtgagcag
gccctgatcggccgtaacagccgggccgtatggcgtctggcgcagagcgtcacggtgcgc
cttgcggaagccacgccgattaccggggggctggtgttcaacttgctgccgggtgcttca
tcttctgcgtcatcccgcccagacagcacagaccggacaaatactcaggaccggttcagc
agccgcaagcgtggcagtccgggacgatccagacggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system