KEGG   Gallionella capsiferriformans: Galf_2467
Entry
Galf_2467         CDS       T01295                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
gca  Gallionella capsiferriformans
Pathway
gca03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gca00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Galf_2467
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gca03019]
    Galf_2467
Enzymes [BR:gca01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Galf_2467
Messenger RNA biogenesis [BR:gca03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Galf_2467
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 UvrD-helicase P-loop_SecA AAA_22 UvrD_C
Other DBs
NCBI-ProteinID: ADL56466
UniProt: D9SK54
Position
2661968..2663482
AA seq 504 aa
MPNTITASPVTFASLNLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGK
TAGFTLPVLHLLNSRPAANPGAGRPRCLILTPTRELAAQVEESVQTYGKYLSLKSLVMFG
GVNINPQIKSLRGQVDILVATPGRLLDHVGQKTLDLSAVEILILDEADRMLDMGFIRDIK
KILALLPKTRQNLLFSATFSEEIKTLSDGLLNNPGFVEVARRNTTSELVAQTVHMVAQKL
KSHLLSHLIKHNDWKQVLVFTRTKHGANRLAEKLNADGIPAAAIHGNKSQSARTKALSQF
KDGTMPVLVATDIAARGLDIDMLPHVVNFELPNVPEDYVHRIGRTGRAGSNGAAISLVDS
EELQHLKDIERLIKTQIPRIAIDSFVPPTHIPPEAPRPPRPQHGQKRHSNTTARPPREGQ
APRDGNRPPREGQGPTGNRAPRDPQARTQPPRGPQSTGQPRPAQKPRSAQSTPKPQPLLS
EAARHQAMPQPALFSPRPAARRGK
NT seq 1515 nt   +upstreamnt  +downstreamnt
ttgccaaacacaattaccgcctcacccgttacctttgccagcctcaatctggctgaaccc
atcatgcgcgccattgctgacgccggttacacgcaacccacccccgtacaggcacaggcg
ataccgctggtgctcgccggcggcgatttgctggccggcgcgcagaccggcacaggtaaa
accgcaggctttaccctgccggtcttacatctgctcaacagtcgtcccgccgctaatccc
ggtgctggtcgcccgcgctgcctgattctgacgccgacgcgcgaacttgccgcccaggtc
gaagaatcggtacagacctacggaaaatacctgtcgctcaaatccttagtgatgttcggc
ggggtcaacatcaatccgcaaattaaatcattacgcggtcaagtggacattctggtcgca
acacccggtcgcctgctcgatcacgtcggacaaaaaacgctggatttatccgctgttgaa
atcctgattctggacgaagccgaccgcatgctggatatgggttttatccgcgacatcaaa
aagatactcgcgctgctgcctaaaacgcgccaaaacctgttgttttccgcgacgttctcc
gaagaaatcaagacgctgtctgacggactgctcaacaatccgggcttcgtcgaagtcgca
cgccgcaacaccacctcggaactggtcgcacaaaccgtccatatggttgcgcaaaaacta
aaaagccatttgctctcccacctgatcaagcacaatgactggaagcaggtgctggtgttt
acccgcaccaagcacggcgcaaaccgtctggcagagaaactcaatgccgacggcattccc
gctgccgcgatccacggcaacaagagccaatcggcacgcaccaaagccttgtcgcaattt
aaggacggcacaatgcccgtgctggttgcaaccgacatcgcagcccgcggtctcgatatc
gacatgctgccccacgtggtcaattttgaactgccgaatgtacccgaagactatgtacac
cgcatcggtcgtaccggacgcgcaggcagcaatggcgcggcgatttcactggtagacagc
gaagagttgcaacatttgaaagacatcgaacgcctgatcaagacacagattccaagaatt
gccattgacagcttcgtgccgcctacccacattccgcctgaagcaccgcgccctccccgc
ccgcagcacggccagaaacgccacagcaacaccacggcccgtccgccgcgtgaaggacaa
gcgcctcgcgatggcaaccgcccgccgcgcgaaggtcaggggccaaccggcaatcgagca
ccacgcgacccgcaagcacgaacacagccgccacgcggcccgcaatcgacaggtcaacct
cgtccggcgcaaaaacctcgctccgcccaatcgacaccgaagccgcaacctttgctgtct
gaagccgcccgccatcaggctatgccgcaacctgcactgttttcaccccgtcctgcggca
agacgcggcaaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (55)   

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