KEGG   Geminocystis sp. NIES-3708: GM3708_933
Entry
GM3708_933        CDS       T04168                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gee  Geminocystis sp. NIES-3708
Pathway
gee03410  Base excision repair
gee03430  Mismatch repair
gee03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gee00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    GM3708_933
   03430 Mismatch repair
    GM3708_933
   03440 Homologous recombination
    GM3708_933
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gee03400]
    GM3708_933
DNA repair and recombination proteins [BR:gee03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     GM3708_933
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     GM3708_933
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      GM3708_933
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 Toprim Glyco_transf_4
Other DBs
NCBI-ProteinID: BAQ60527
UniProt: A0A0D6ACL4
Position
1043412..1045151
AA seq 579 aa
MTTEYNLPRQRWKFYPQNPSLVNNLISYLGLSPIITQVILNRGIVDIKEAQGYVNPEIID
LPSPLTEFLDLDKSIEILKNAIASRQKIAICGDYDADGMTSTALLLRGLRHLGAQVDYAI
PSRMTDGYGINRRIVEEFKQEGVSLILTVDNGISAYDAIARAKELDLKVIITDHHDLPPK
LPPADAILNPKLLPEDSPYRSLAGVGVAYILAVTLAQNLNQLQGLTKPLLELYTVGTIAD
LAPLTGVNRRWLKRGLKLLSNSDILGIRSLIKLAEVDGQKKLLNSDDIGFKIGPRINAIG
RIDDPQIVIELLTTEDEEIAITRAMQCNLSNQTRQNLCKQIEQEAIKIIEETPLNWQEDR
VLLIIHENWHHGVIGIVASRLLERYGVPVFIGTYDEEKTDIIRGSARGIEEYNVFLALQY
CDDLLDKYGGHKAAGGFSFSRQNLSLIHERLKDFSHKCLIPEYLKPLIKIDAQINFSQIN
FKLLKEIDSLYPWGIENKAPTFCTSKVKVISQKLTKTGEHLQLTLIDQAQQLKGIAWGWH
HYYPLPPVVDIAYRLKENEWNGDKSIQLEIIGARESDKV
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgacgacagaatataatttgcctcgtcaacgttggaaattttatcctcaaaatcccagt
ttagttaataatttaatctcttatttaggtttatctcctatcattacccaagtgatttta
aatcgtggtatcgttgatataaaagaagctcaaggttatgttaatcctgaaattattgat
ttgccttctcctttaacagaatttcttgatttagataaaagtattgaaatattaaaaaac
gccatcgcttctaggcaaaaaatagcaatatgtggtgactatgacgctgatggtatgact
agtacggctttattgttgagaggtttaagacatttaggggcacaggtggattatgctatt
cccagtcgcatgacagatggttatggtattaatcgtcgtattgtggaagaattcaagcaa
gaaggggtaagcctgattttaactgtagataatggtatttctgcttatgatgcgatcgca
agggctaaagagttagacttaaaagtaattatcacggatcatcatgatttaccaccaaag
ttgccccctgctgatgccattttaaatccaaaattattgcctgaagattctccttatcgt
agtttagcaggagttggagttgcttatattttggcggtgactttagcacaaaatttgaat
caattacaaggtttaacaaagccattattagaattatacaccgttgggacgatcgccgat
cttgcacccttaacaggagtaaatcgccgttggttaaaaagaggtttaaaattattgtca
aattctgatattttgggaataagatcattgattaaattagcagaagttgatggacaaaaa
aaacttttaaattctgatgatataggctttaaaattggtccgagaattaacgctattggg
cgaatagatgatcctcaaattgtcattgaattattgacgacagaagatgaagaaattgct
ataactagagcaatgcaatgtaatttaagtaatcaaactcgtcaaaatttatgtaaacaa
attgaacaagaagctattaaaattattgaagaaactcctttaaattggcaagaagatcga
gttttattaatcattcatgaaaattggcatcatggcgtaattggaatcgttgcttctcgt
ttattagaaagatatggtgtacctgtttttatcggcacttacgacgaagaaaaaacagat
ataataagaggctcggctagaggaattgaagaatataatgtttttttagctttacaatat
tgcgatgatttactagataaatatggagggcataaagccgcaggaggatttagtttttct
cgtcaaaatttatcattaattcatgagcgtttaaaagatttttctcataagtgtttaatt
ccagaatatttgaagcctttaataaaaatagatgcacaaataaacttttcacaaataaac
tttaaattactaaaagaaatagacagtttatacccttggggaattgaaaataaagcccca
actttttgtacatctaaagtaaaagttattagccaaaagttgacaaaaacaggagaacat
ttacaattaactctaatagatcaagcccaacaattaaaaggaatagcatggggttggcat
cattattatcctttaccgccagtagttgatatagcctatcgactcaaagaaaatgagtgg
aatggagacaaatcaattcaactagaaattattggtgcaagagaatcggataaagtataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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