KEGG   Geobacter sp. M21: GM21_3271
Entry
GM21_3271         CDS       T00933                                 
Name
(GenBank) protein of unknown function UPF0027
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
gem  Geobacter sp. M21
Brite
KEGG Orthology (KO) [BR:gem00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gem03016]
    GM21_3271
Enzymes [BR:gem01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     GM21_3271
Transfer RNA biogenesis [BR:gem03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    GM21_3271
 Prokaryotic type
   tRNA splicing ligases
    GM21_3271
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: ACT19297
UniProt: C6E478
Position
3802343..3803803
AA seq 486 aa
MNVPAALKRITDQLWELPVSYKEGMLVPARIFASEKLVREMDAGVFEQVSNVATLPGIQR
YAYCMPDGHWGYGFPIGGVAAMDPGTGVISPGGIGFDINCGMRLVLTNLTADQVIPKLHQ
LVDRLFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKNGFATQEDLDMTEEGGCFSGA
DASHISDKAVERGYNQLGTLGSGNHYCEIQVVKPENVMDAELAAAFGLTMVPNQVVIMFH
CGSRGFGHQVATDYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAF
ANRQVILHRIREVFSDLFHASPDELGLRMVYDVAHNTAKLERHEVNGTRKELLVHRKGST
RAFGPGAAGLPGCYAKTGQPVIIGGSMETGSYLLAGMQSGADAFFTTAHGSGRTMSRHEA
KKNFRGDKLQREMEARGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVP
IGNIKG
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgaacgtaccggcggcgctaaagcggatcacagatcagttgtgggaactaccggtaagc
tacaaggaagggatgctggtccccgcccgaatctttgcctcagagaaattggtccgggag
atggatgccggcgttttcgagcaggtcagcaacgtcgccacgctccccggcatccagaga
tacgcctactgcatgcccgacggccactggggctacggctttcccatagggggtgtagcc
gccatggatccgggtaccggcgtcatctcgccgggagggatcggtttcgacataaactgc
ggcatgcggctcgtattgacgaacctcaccgccgaccaggtcatccccaaactgcatcaa
ctggtcgatcgtctcttcgcccggatacccaccggcgtcggatgtcatgggttcgtgaag
ctgaagcaggacgattttcgttccatagtgcagcagggttcgcgctggtgcctgaaaaac
ggcttcgctacccaggaagatctggatatgaccgaggaagggggctgcttttccggcgcc
gacgcctcacacataagcgacaaagcggtggaacgcggctacaaccagctcggcacactg
gggtccggcaaccactactgcgagatccaggtggtgaagcctgagaacgtcatggacgcg
gaattggccgcagccttcgggcttaccatggtacccaaccaggtggtgatcatgttccat
tgcggcagcaggggcttcgggcaccaggtggcgacggactacctgaagctgttcctctcc
gtcatggggcgcaagtacggcataaagatcgtcgaccgcgaacttgcctgcgctcctttt
cactcgcccgaaggtcaggcctacttcagcgcgatgaagtgtgccgtcaacatggccttt
gccaacaggcaggtgatcctgcaccggatcagggaggtgttttccgacctgttccacgcc
tcgcccgacgaactcgggctgcgcatggtgtacgacgtggcgcacaacacggcaaagctg
gaacggcacgaggtaaacgggacccggaaggaactcctggtgcaccgcaaaggatccacc
cgcgccttcggccctggcgctgcagggctacccggatgttacgcgaagaccggccagcct
gtcatcataggcgggagcatggagaccggctcctatctgctcgcggggatgcaaagcggc
gccgacgccttcttcaccaccgcccacggcagcggcaggaccatgagcagacatgaggcg
aagaaaaatttcaggggcgacaagctgcagcgtgaaatggaggcgcgggggatctacgtc
cgcaccgactcgttcggcgggttggcggaggaagcgggacccgcatataagaatatagac
gaggtcgttgaagccaccgaactggccggcttgagcaagagggtggcgcgcctggttccg
atcggcaacatcaaggggtag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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