LOCUS MN379629 6541 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg4_76, complete genome.
ACCESSION MN379629
VERSION MN379629.1
KEYWORDS .
SOURCE Chicken microvirus mg4_76
ORGANISM Chicken microvirus mg4_76
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 6541)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6541)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6541
/organism="Chicken microvirus mg4_76"
/mol_type="genomic DNA"
/isolate="mg4_76"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720917"
/country="USA"
/collection_date="2017"
CDS join(4849..6541,1..8)
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82282.1"
/translation="MAIQDYPFVKCTNPSFMVDRLTGKPVLVPCGKCQACLNQRADRY
TLQCRLEAQSVNYVRFVTLTFAQTTVPRLAVHSYSVGYHPQLHHDLVDKETGEVVYQY
VDNPDTMPLSAVLQKQQCFGDFMYLDMSAASLFVKRLRSFLARLWSSQKRYYNYIEKT
TGHHEFNIFQNGSVPPVRTFIAGEYAPDHWRPHFHILFFFDSDWIAGPADLYHGTVEK
GFSFQRHTLSEFPEWTWSKNPDISPSPDDTLSILEYAVRSCWTFGINETAVPKGDTSS
YVASYVNSSMSLPRIFQANCFRPRCLHSNFLGQRFLKGERTSVYKMSPKAFIRRGYEC
NGEIKQYNLWRSAYSVFYPRIRGYSIKSPQELFDAYTAYYRAVEIYGRGAKTSFIARE
IVDEIIRSLHNPSLCCHDSRFVKLCRYFKSEFYDTFAHDLLKTPVDDPLFQEVYFRWY
VNVYTFLRVSKHFCTFCSDGFDVHSFRVRLNSIIEFYKTLDYWHLTDWYKSQQKYFEK
DFACPEDVVYFYNNVEFNLNEFKSSFLYKKYYQYNFDRFRERIKHKSTTHLNLEFDYG
"
CDS 1..1839
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82287.1"
/translation="MAKNNIMSLVKARNKTSRSGYDLSKRIAFSTKPGELHPIWWRNV
FPGDHWEFDLNSFMRTAPVATASQGRLRYYYDFFFVPMEQLWQFFPTFITQMNDNKQH
SNGLLKSQNPNLDGTLPSFTMGDFSAYTNALNSSSYKTNMFGFSRVALSRRLFNYLTG
PRFNSDGSLIGGSTGLVPHSLLPWAAYQKIYADYFRYTQWETVNPATFNFNFMKGSGD
TELADYTSTITSNDFLRNETIFDMRYCNYQKDLFHGLLPTSQFGEEAAVPLNFTSDVN
NFVLNGVTFGAQGNTSGGSVAFGPLVFNKAVGKDASILNSEVSVGRTSSNTSYSTINR
LQGSIADGSLAGDLPILLLRQYESYQKWKEISLAAEEDYKSQLEAHWGVSVSEYLSGM
VRYLGGISGNVNVNEVVNQTLTEAEANIRGKGLDSANGKITFDFNGEYGILMIIQHSL
PLLDYNTSGYHLESTMIHAEDYPIPELDSIGMEQLPSYYLSTASSVFPNVSLIGYMPR
YCQFKTDYDVVFGAFRSSLKNWVLPYDDSDVIDANNSSMTPDDNPNVGLQGSYLRYQF
FKVNPHIVDDMFASVMDDTPETDPLWFWCYLNVRVTRSLDRNGLPY"
CDS 1881..2369
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82286.1"
/translation="MTNKNIQTLKRAVQIFPKVAANYSSYLNQDYCVVRTPQRMEQYF
FAKRVTSQGEQIIEYHNDIYLMFHADKLDTSTKQALMEKIQAQPPIDPIRHLSDRLSP
EQMCQFVRSRYCQSLSELRAYSAQLQRMTDAELNSYMGSFKPADTGAGDAGDTGSGGS
SE"
CDS 2369..3526
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82283.1"
/translation="MAAAAAITAAGTLASGLGSIGSGIGNGISQKKTNDKNLQINREN
NEFNRQMMEEQMRYNTEMYERSLSDSRETWEQQFNAVNEYNDPSAQLDRLQKAGVNRQ
LAAAGLSGSASTASPTSSAGTSSGVTPAQSHGIQLQAPKYDLSGIQGAVAAGVDMYTK
LKNTESNTALTDEQRIGAQLSNQFYIQRVMSEIFKNNASAGYDNARSMTEQAMRPLYV
QKAQTDIVNGLQNYQRLQQVTKSIRIQNAMDSIRLENLPDQIKLDLSQKIASIAESYS
RQELNRAGAKKAMQNVFESAARAAGIQMKNAMFAATVDQQIERIDKENQLLQKQIDSF
LPPREAKLWDIGKGVLDTAGDFLLYKGMGGLFRRAAKSAPAMQGALGYPMN"
CDS 4104..4346
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82285.1"
/translation="MKKFTVTFDTPLRVALYVVVTASSFEDAITRAQGIMCEDILDMS
GYEPIEVTLHLEFDQIPESHATTKRPKKKNEQTLAE"
CDS 4411..4668
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82284.1"
/translation="MVKSVKNEVFNSLFGITVSDKSLTFVPVERLSANNLRMKHFRSH
RVGRNLSNKVGITPLERSDSYADSIHQLLHISSEFFILRQL"
ORIGIN
1 atggctaaaa ataacatcat gagccttgtt aaggctcgca ataaaacttc gcgttcaggc
61 tatgacttgt ctaaacgtat tgcgttctca actaagcccg gtgaacttca cccaatttgg
121 tggcgtaacg tttttcccgg tgatcattgg gaatttgatt taaatagttt tatgagaacg
181 gctcccgttg ctactgcatc acaaggtcgt ttacggtatt attatgattt cttttttgtt
241 ccgatggagc aactttggca gttctttccg acttttataa cccaaatgaa cgataacaag
301 cagcattcca acggtctatt aaaatcgcag aatcctaatt tggatggtac tttgccttct
361 tttacgatgg gagacttttc agcatataca aatgcgttaa attcctcttc ttataaaact
421 aacatgtttg gtttttcgcg cgttgctctt tctcgtcgtc tattcaatta tcttactggt
481 cctcgattta attctgatgg ttctcttatc ggtggttcaa ctggtcttgt tcctcattct
541 ttattaccat gggctgcgta tcagaagatt tatgcggatt acttccgcta tactcagtgg
601 gaaacggtca atcctgctac ttttaatttc aatttcatga aaggttctgg agatacggaa
661 ttagctgatt atacctcaac gattaccagc aatgattttt tacggaatga gactatattt
721 gatatgcgtt attgcaacta tcaaaaggat ttgtttcatg gcctcttgcc tacttcacag
781 tttggcgaag aagctgctgt acctttgaat tttacttctg atgttaataa ttttgtatta
841 aatggcgtta cttttggtgc tcaaggtaat acttctggtg gttctgttgc ttttggtcct
901 ttagtattta ataaagctgt tggcaaggat gcttctattt taaattctga agtttctgtt
961 ggtcgtacat cttctaatac ttcttattct actatcaatc gtcttcaggg ttctattgct
1021 gacggttcac ttgctggtga tcttcctatt cttttacttc gtcaatatga atcctaccag
1081 aaatggaaag aaattagtct cgccgctgaa gaagattata agagccaact cgaggctcat
1141 tggggcgtat ctgtatctga atatctttca ggtatggttc gttatcttgg tggtatttct
1201 ggaaatgtaa acgttaatga ggttgtaaat cagaccttaa cagaggcaga agcaaatatc
1261 cgtggtaaag gtttggattc tgccaacggt aagattacat ttgattttaa cggtgaatat
1321 ggtattttga tgattattca gcattcattg ccgttacttg actataacac ttctggatat
1381 catttggaat ctactatgat ccatgcggaa gattatccga ttcctgaact tgatagtatc
1441 ggtatggaac agctgccctc ttattatctt tctacggctt catctgtttt tccgaatgta
1501 tctttgattg gatatatgcc tcgctattgt cagttcaaga cagattatga cgttgtgttt
1561 ggagcttttc gctcttctct caagaactgg gtgttgcctt atgatgattc ggatgttatt
1621 gatgctaata attcatcgat gactccggac gataatccga acgttggtct tcaaggttca
1681 tatttacgtt atcaattttt taaggttaat cctcatattg ttgatgatat gtttgcttct
1741 gtgatggatg acactcctga aactgaccct ctttggttct ggtgttattt aaatgtccgt
1801 gtcactcgta gtcttgatcg taacggtttg ccctattaat ttgtctaatt gtaattgttt
1861 aatcgtaaat ttttgataat atgacaaata aaaatataca aactttgaaa cgtgctgttc
1921 aaatatttcc taaagtcgcc gcaaattatt cctcttactt aaatcaggat tattgcgtag
1981 ttcgtactcc tcagcgtatg gagcagtatt tctttgctaa gcgtgtgact tctcaaggtg
2041 agcaaattat agagtatcat aacgacatct atcttatgtt ccatgcagat aagttggata
2101 cttcgactaa acaggcgtta atggagaaaa tacaggcgca accgcctatc gacccaattc
2161 gccatctctc tgatcgtctg agccctgaac agatgtgcca atttgtcaga tctcgttatt
2221 gtcaatctct ttctgaactt cgtgcgtatt ctgctcagtt gcagcgtatg acggatgctg
2281 agttgaactc ttatatgggt tcctttaaac ctgccgatac tggtgccggt gatgctggag
2341 acactggctc aggtggctct tctgaataat ggcagctgct gctgctatta ccgctgctgg
2401 tactcttgct agtggacttg gttctattgg ttcgggcatt ggcaacggta tttcgcaaaa
2461 gaagacgaac gataaaaatc tccagatcaa ccgtgaaaat aacgagttca atcgtcaaat
2521 gatggaagaa caaatgcgtt ataacacgga aatgtatgaa cgttcgttgt ctgattctcg
2581 cgaaacatgg gaacaacaat ttaacgcggt aaatgagtat aatgatccgt ctgcacaact
2641 tgaccgtctg caaaaggctg gtgttaatcg ccagctcgcc gcggctggtc tttctggctc
2701 cgcttcgact gcttcgccta cgtcctctgc tgggacttct tcaggtgtta cgcctgcaca
2761 gtcccacggt attcagttac aagctcctaa atatgacctc tctggcattc aaggcgctgt
2821 agctgctggt gttgatatgt acacgaagtt aaagaataca gaatctaata cagctctgac
2881 tgatgaacag cgcatcggag cacagttgtc aaatcagttc tatatccaga gagtaatgtc
2941 tgagatattc aagaacaacg catctgctgg ttacgataat gcccgttcta tgactgaaca
3001 agctatgcgc cctctttatg tccaaaaggc acaaacggat attgttaacg gtctacaaaa
3061 ttatcaacgt ctgcaacagg taacaaaatc tattcgtatt cagaatgcaa tggattctat
3121 ccgtttggaa aatcttcctg accagattaa gttggatttg tctcagaaga ttgcctctat
3181 tgcggaaagt tattcacgtc aggagcttaa tcgtgccggt gctaagaaag ctatgcagaa
3241 cgtatttgaa tcggctgccc gtgctgctgg tattcaaatg aagaatgcaa tgtttgcggc
3301 tactgttgac caacagattg agcgtattga caaagaaaac caactgctac agaaacagat
3361 tgattctttc ttgccgcctc gtgaagcgaa gctctgggat atcggtaaag gtgttcttga
3421 tactgctggc gacttcttat tatataaagg tatgggcggt ctgttccgcc gtgctgcgaa
3481 gtctgctccg gctatgcaag gtgcgttggg ttatcccatg aactgatgaa atcgtttctc
3541 acttttcccg gagggtagcg cggcttcaat gcccgctatc cttctttctt gtcaaacctt
3601 gaaaaagtga cacgtatgta cgaaataatt ggatttcctg ttacattcta ctcccgttct
3661 gaggtcatcg attgtcttgc ttcgttatca cctgagactc gtcatttatt cgaatgttct
3721 tggatagcat ataaaggtcg tcccttattt atgattttag ttgaaccgga tggtgaaaga
3781 tttggtttaa aacttattcc ttttcattaa cattcgtttg caagtcaatt ctatgtattt
3841 tgtatctttg taatacagaa aactgctaaa taaattgatt atgaaaaaag tatcttatct
3901 tattgatggt gaatcaactc gttactctaa tcttcgtgag cttggtttac atttaaatct
3961 aatgtctgct cgtgaccgtt cttattatga tggtgtatta gttctccggg agtcttcatc
4021 ttgtatttct tgtacacatg aaattattgt taatcatgaa tctatacgat tcagaccttt
4081 acgtaagata aaattagatt agcatgaaaa aatttactgt aacttttgat acgcctttgc
4141 gcgtcgcgtt gtatgttgta gttactgcat cttcatttga ggatgcaatt actcgtgcgc
4201 aaggtattat gtgtgaggat attcttgata tgtccggata tgaacctatt gaggttacgt
4261 tacatctcga atttgaccag attcccgaat cacatgcgac aaccaagaga cccaaaaaaa
4321 aaaatgaaca aaccttagcg gaatgagctt ttttttatgc gcttaacctt tcgacccgca
4381 cggtcttttt aagatttttc tgatattgca atggtaaaaa gtgttaaaaa cgaagttttt
4441 aattcgcttt ttggcattac agtatcagat aaatctttga cctttgtgcc ggtcgagaga
4501 ttaagtgcta acaatttgcg aatgaagcat tttcggtccc acagagtggg ccgaaatcta
4561 tcgaataaag tcggcataac accattggag cgtagcgata gttatgccga cagtatacat
4621 caactgttgc atatctcaag tgaatttttt atattgcgac aactttaatt attataatta
4681 tgaaaacttg tatttatgtt gttgcaattg ttggtgctat attggtggca tcttgtggtt
4741 catcttggga agtctcagga aataatattg taattaacaa ggcagataag cccgtagaag
4801 tccctgccgg tacttactac atcttgcctg attcagtacc aaaataatat ggctattcag
4861 gattatcctt ttgtcaagtg caccaatccc tctttcatgg ttgaccgttt gaccggcaag
4921 cctgtccttg ttccttgtgg caagtgtcag gcttgtttaa atcaacgagc tgaccgctat
4981 acgttgcaat gtcgcttgga agcccagagt gtaaattatg ttcgttttgt cacgttaaca
5041 tttgctcaaa cgactgttcc gcgtttggct gttcactctt attctgtcgg ttatcatcct
5101 cagttacatc atgatttagt tgataaagaa accggtgaag ttgtatatca atacgttgat
5161 aatcctgata caatgccgtt gtctgctgtt ctccagaaac aacagtgctt tggcgatttc
5221 atgtatctcg acatgtctgc tgcctctctc tttgtcaagc gtttacgttc ttttttagct
5281 cgtttatgga gctctcaaaa gcgttattat aactatatag aaaaaacaac tggtcatcat
5341 gaatttaaca ttttccaaaa cgggtctgtt ccccccgtac gtacgtttat tgccggtgag
5401 tacgcacccg accactggcg cccacatttc catattctct ttttcttcga ttccgactgg
5461 attgccggac ccgcggactt gtaccacgga acagttgaaa aaggattttc ctttcagcgg
5521 catactctct cggaatttcc cgaatggact tggtcaaaaa accctgatat atcgccctcg
5581 ccagacgaca ccttatcaat cctcgaatat gctgtacgtt cgtgctggac gtttggtatt
5641 aacgagacgg cagtcccgaa aggagacact tcatcgtacg ttgcgtctta cgttaacagc
5701 tctatgtctt taccccgaat ttttcaggca aactgcttca gaccccgttg cctgcactcg
5761 aatttcttgg gtcaaagatt tcttaaaggc gaacgcacat cggtatataa aatgtcccct
5821 aaggcattta tacgacgagg ctatgaatgt aatggagaaa ttaagcagta taacctatgg
5881 cggtcggctt actctgtctt ttatccccga attagaggtt attctattaa gtctccacaa
5941 gaattatttg acgcttatac agcctactat cgagcagttg aaatctatgg aagaggagca
6001 aaaacctcct ttattgccag agaaatagtt gatgaaatta tacgttcttt acataatccc
6061 tctttgtgtt gtcatgattc aagatttgtt aaactttgcc gatactttaa atcggaattt
6121 tatgatacgt tcgcccacga tttattgaaa actccagtgg atgatcctct ttttcaagag
6181 gtatattttc gttggtacgt gaatgtatat acttttttac gagtatctaa acatttttgt
6241 acgttctgtt cggatggttt tgatgtacat tcttttcgtg tacgtctaaa ttctatcatt
6301 gaattttaca aaactctcga ctactggcat ctgacagatt ggtataaatc tcaacagaag
6361 tattttgaaa aagattttgc ctgtccggag gatgtagtat atttctataa taacgttgaa
6421 tttaacttaa atgagttcaa gtcttccttt ttgtacaaaa agtattatca gtataatttt
6481 gaccgtttca gagaacgtat caaacacaag tctacgactc atttaaattt ggaatttgat
6541 t
//
