LOCUS MN379630 5765 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg4_115, complete genome.
ACCESSION MN379630
VERSION MN379630.1
KEYWORDS .
SOURCE Chicken microvirus mg4_115
ORGANISM Chicken microvirus mg4_115
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 5765)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5765)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5765
/organism="Chicken microvirus mg4_115"
/mol_type="genomic DNA"
/isolate="mg4_115"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720914"
/country="USA"
/collection_date="2017"
CDS join(5309..5765,1..14)
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82290.1"
/translation="MKIKIYLPYGPKKPRKCSCAGNKTEPHYVERYTETGHPYLVKDG
ETDIVAIIQSHKEECDINLMLQRYAAGDTSVMRNDAKYIDTSELPTTIHGYFNLMAAQ
REKFNALPVEIKQKFDNSFEVWAATSGTEEWVEKMGLNQKKTEPEKEVTNNGES"
CDS 1..1686
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82291.1"
/translation="MANRNAESRFAQIPRAEIRRARFKRDFSNITTINEGDLVPLYVD
EVLPGDTISCDLNGLIRMSTPLYPVMDNCYLDTYAFFVPCRLLWEHWENLMGQNDQSF
WAEKTDYSVPQTTAPSTGWDVGTIADYMGIPTGIKGISVNSMPFRAYARIWNEWFRDE
NLQQPVVQDIDDANNTGSNTGTGLNDAQNGGLPLKVAKYHDYFTSCLPEPQKGEAATI
PISLPNEIPVTTSAATFTTPQNGLYMSVPGSQNGPASGSYNYAGIAVGKQSSNHPTWV
SALPSEGTNADPVASQQLAPYNLVALAADAANISITVNELRQAIAIQHILEADARGGT
RYTELLAHEFGVTSPDSRLQRSEYLGGTRVPININQVIQQSATTDASPQGNTAAYSMT
TLRNKMCNYSAVEHGYLLILGAIRVDHSYQQGLARMWTRKGRFDFYHPMLANLGEMAV
LNKEIYCQGTEKDDEVFGYQEAWADYRYHPNIVTGEMRSSYVQTLDAWHYADYYKELP
TLSSTWIQEGEENIDRTLAVESENSHQFICDFYFDQTWTRPMPIYSVPGLNTI"
CDS 1745..2704
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82289.1"
/translation="MPVSAIAAQALGTLFNMAIQVGGQYASNKINQWMNKTGGGSNTS
SGNQLGTITQSGSSSSAMSQTGQTSTSTVQQGSVSGLANFLSTALGTATGNNAQTAFN
ASQGSATTANNIMANQWNNANILNMVSSGAANLMNMMSQTSAKRYNSKEAELARNWQK
AMRETAYQDTMKDMKAAGLNPILAAMNGATSTPSSSGASIGGTSYSHAQAAAIPSAKT
ATMQAMYDYGNNNAQAVQNYAQAIMSAKQLGQEYTASQLAQQMSQVTASTSKQVAKTS
QIADSVYHDSSTGGSKGSGWSAGGNVSAGGSRNSSFGNKDFYY"
CDS 2800..3966
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82288.1"
/translation="MCYAPNVLIGRKFKGGLKKYCKENDVSNEQLTGMLKSDLAKIIP
CGQCLECRLNYAKNWAARCEVESYYYQNSHFITLTYDDEHVPVINKITGEIYRGLKNP
VDYYNYGKHYEKLNLFKKDVQDFMKRLRDYAKRHDLIEDPKKGIRYFYCGEYGTGTHR
PHYHMIIYGLKLPDLKFHYMKKGYYHFLSETISQLWQNGFHDIGGVDYKSCQYVARYI
VKKQKGKDGKEWYREQALNPEFINMSLKPAIGLRYYEEHREEIYSKDMIYLKEGRKQK
PCKLYDIKEDEYQCIREFGLTDEEMGQFKGEKRRIQAYNREQKRDLEKIPVPRMESST
MQALKMERRQKAMDSLWAKLEKTALGILEYMDVQKNKYEEKHKIAIQRPCSDQC"
CDS 4424..4921
/codon_start=1
/transl_table=11
/product="peptidase"
/protein_id="QIR82293.1"
/translation="MRFGRWQKKSSKSSTKSTTQSSRRNRKMTKTTRRTLCESYIVTN
NPNEVVDTKGYFRAHEFKSPDSNVIFVNKVLGYILGELRHRINEPIYINSGYRTPKHN
KEVGGSSISYHMYGAAADIRAKTYTAHELYEILDNMLDGWGGLEEHETFVHVDVRDGK
WRSKL"
CDS 5068..5319
/note="Simialr to PHA00198"
/codon_start=1
/transl_table=11
/product="nonstructural protein"
/protein_id="QIR82292.1"
/translation="MTKYLYAIHDKLAGIYSAPFALNPKTAQRTFDFMAKERNEQDCK
DQRIVYLGMYDDETGTIVMTDTITEVYDLEKEWGRKHEN"
ORIGIN
1 atggcgaatc gtaacgccga aagccgcttt gcgcagatac cgcgcgcaga aatccggcga
61 gcaagattca aacgggactt ttccaacatc acgaccatca atgaaggcga ccttgtgccg
121 ctgtacgtcg atgaggtact gccgggcgac accatcagtt gcgatctgaa cgggttaatc
181 cgcatgagca cgccgcttta tcctgtcatg gataactgct atctggacac ctacgcgttt
241 tttgtgccgt gtcggctctt gtgggagcac tgggagaacc tgatgggcca gaatgaccag
301 agcttttggg cagagaaaac cgactacagc gtgccgcaga ctacagcacc gtctaccggc
361 tgggacgtgg gcaccatcgc ggactatatg ggcattccca cgggcatcaa gggcatcagc
421 gtgaacagca tgcctttccg ggcctacgcg cgcatctgga atgaatggtt ccgtgacgag
481 aacttgcagc agcctgtcgt gcaggatatt gacgacgcca acaacaccgg gtcgaacacc
541 ggcaccgggc tgaacgacgc acagaacggc ggacttccgc tgaaggtggc gaaataccac
601 gactatttca cgtcctgtct gccggagccg cagaagggcg aagcagcgac aattcctatc
661 agtcttccga atgaaatacc tgtgacaacc agtgcagcaa cgttcacaac gccacagaat
721 ggattgtaca tgagtgtacc gggaagccag aacgggccgg ccagcggcag ctacaattat
781 gcaggcatcg cggtaggaaa acagagcagc aatcacccca catgggtatc ggcactgccg
841 agcgaaggta caaacgccga tccggtagca agccagcagc tggcaccgta taatctagta
901 gcactcgccg cagacgcagc aaacatctcc ataaccgtga acgaattacg acaggctatc
961 gccattcagc acattttgga agctgacgcg cgcggcggta cccggtatac ggaacttctg
1021 gcacatgagt tcggcgttac cagtcctgac agcaggctgc agcggtcgga atatctgggc
1081 ggcactcgag tacccatcaa cattaaccag gtcatccagc agagcgcaac cacggacgca
1141 agcccgcagg gcaacacggc ggcatactct atgaccactc tgcggaacaa gatgtgcaac
1201 tactcggccg tagagcatgg gtacctgctg attctgggcg caatccgggt tgaccacagc
1261 taccagcagg gcctcgcaag gatgtggacg cgcaagggcc gctttgactt ctaccatccc
1321 atgctcgcca atttgggcga aatggcagtc ctcaacaagg aaatctactg ccagggcacg
1381 gaaaaggatg atgaagtgtt cggctaccag gaagcctggg ccgactacag gtatcatccg
1441 aacatcgtga ccggcgaaat gcgcagcagc tacgtacaga cgttagacgc atggcactac
1501 gcggactact acaaagagct gccgacactc tccagcactt ggattcagga aggtgaggag
1561 aacatcgaca gaacgctggc agttgagagc gaaaacagcc accaatttat ctgtgacttc
1621 tactttgacc agacctggac acgacccatg ccgatctaca gcgtacccgg cctcaacacc
1681 atctaatctt aaggctcggc cttgacgggc cgggcctatc ttattataat aggaggtata
1741 accaatgcca gtatcagcaa ttgcagcaca agcactcggc acgctattta acatggcaat
1801 ccaagtagga ggacagtatg caagcaacaa aatcaaccaa tggatgaaca aaaccggggg
1861 cggcagcaac accagcagcg ggaaccagct tggaaccatt acacagagcg ggagcagctc
1921 ttccgcaatg agccagacag ggcagacatc cacaagcacc gtacagcagg gcagcgtttc
1981 gggcctcgca aacttcctgt ccacggcact tggcacagct accggaaaca acgcacaaac
2041 ggcattcaat gcatcacagg gaagcgcaac cacagcaaac aacatcatgg ccaaccagtg
2101 gaacaacgcc aatatcctga acatggtcag ttccggggcg gcaaacctga tgaacatgat
2161 gagccagaca tcggcgaagc ggtacaactc caaagaggcg gagcttgccc gaaactggca
2221 gaaggcaatg cgggagaccg cataccagga caccatgaag gacatgaagg cagcaggact
2281 gaatccgatc ttagcagcca tgaacggcgc gaccagtaca ccaagttctt ccggcgcgtc
2341 catcggggga accagttaca gccacgcaca ggcagcggca attccgtccg cgaaaacagc
2401 aaccatgcag gctatgtatg actacggcaa caacaacgcg caggccgtac agaactatgc
2461 acaggccatc atgagcgcaa agcagctggg ccaggaatac acggctagcc agcttgcaca
2521 gcagatgagc caggttacgg cctctacgag taagcaggtg gccaagacaa gccagattgc
2581 agatagcgtc taccatgaca gcagcaccgg cggaagcaag gggagcggct ggagtgcagg
2641 cggaaacgta agcgctggag gcagcagaaa tagcagcttc gggaacaaag acttctatta
2701 ttaacggcta ctgacctgtc acctaggcca gtaggacaac aagtatgtcc tactggccta
2761 tcgagaggtc aggagctgca agaggaaagg agatttagaa tgtgctacgc accgaatgtt
2821 ctcatcggcc gaaaatttaa gggcggcctc aagaaatatt gcaaagagaa cgacgtaagc
2881 aacgagcagc tcacagggat gcttaaatca gatctagcaa aaatcatccc gtgcgggcaa
2941 tgcctcgaat gccggctaaa ctacgccaag aactgggcgg cacggtgtga ggtcgagagc
3001 tactattacc agaacagcca ctttatcaca ctcacatatg atgacgagca tgtgccagta
3061 atcaataaaa tcacgggcga gatatacaga ggactgaaga atccggtaga ctactacaac
3121 tacggaaagc actacgagaa gctgaacctc ttcaaaaagg acgttcagga cttcatgaaa
3181 cggctccgcg actatgcgaa gcgacacgat ctgatcgaag acccgaaaaa gggaatccgc
3241 tacttttact gtggagagta tggaaccgga acacatcgac ctcactacca tatgatcatc
3301 tacgggctta aattaccaga cctgaaattc cattacatga agaaggggta ttaccacttc
3361 ttgagcgaaa ctattagcca gctctggcaa aacggcttcc acgacattgg cggagttgat
3421 tacaagtcct gccaatatgt tgcacgatac atagtcaaga aacagaaggg caaggacgga
3481 aaagagtggt acagggagca ggcgcttaac ccggaattca tcaatatgtc attaaagcct
3541 gcgatcggtc tgcggtacta cgaggaacac cgggaagaaa tctattccaa agacatgatt
3601 tatcttaaag aaggtcgtaa acaaaaacct tgcaagcttt acgacattaa agaagatgaa
3661 taccagtgta tacgggagtt cggactcacc gatgaagaaa tgggacaatt caagggagag
3721 aaacgccgga ttcaggcata caaccgggaa caaaaacgag accttgagaa aataccagta
3781 ccaaggatgg aaagcagcac catgcaggcg ctaaaaatgg agaggcggca aaaagcaatg
3841 gatagcctct gggccaaact ggaaaaaacc gctcttggaa tccttgaata catggacgta
3901 cagaaaaaca aatacgaaga gaagcacaag atagccatac agcgaccttg tagcgatcaa
3961 tgctgaacaa aggcaaaact agctgcaggc ctttagctgg gggcggccta ccggctcctt
4021 ttgatcggac acaagcacac ggccgcttgc gcgggccgtt ttgaaattct taaaggaaga
4081 gccgggctac ggcctgttct cgctccgctc ctaaagcacc ttgacaaccg aatagttttc
4141 aacaatgttt cctgaaattc actattgaat gttgaatatt ttctggtata atagaatcag
4201 aaaaggagga aacgaaaatg atcaataccg aagtcaccgt aaaagtctac gacagcgaag
4261 aggcctcata cgaaatcaga aatctgaaaa agctaggata ccaaagaaca cagaatgcat
4321 tctggatcga atggtgggaa aaaggaaccc accgggtaat cctggtaaga gacttctaag
4381 ggaatgccca gaaaggaggt gaagccaatg ggccttgaaa tccatgagat ttgggagatg
4441 gcaaaaaaaa tcctcgaaat cctcgacaaa atctaccacg cagtcatcaa ggaggaaccg
4501 gaagatgacg aagacaacca gacggacact ctgtgaaagc tacattgtca caaataaccc
4561 gaacgaagta gtggacacaa aagggtactt cagggcacac gagttcaaaa gcccggacag
4621 caacgtcatc ttcgtgaata aggtactcgg gtacatcctc ggggaactcc ggcacagaat
4681 caacgaacca atctacatca actcaggata cagaacgccg aaacacaaca aagaagttgg
4741 cggaagctcc ataagctacc acatgtatgg agcggccgca gacatccggg caaaaaccta
4801 caccgcacac gaactctacg aaattctcga caacatgctc gacggatggg gcggactcga
4861 agaacacgaa actttcgtcc acgtcgacgt acgggacggg aaatggagga gcaaactcta
4921 aaggaggaca caccatggca cacagaatga cagtcaaacc caagaccgac aagaaaatct
4981 tcacaaacac cgcaaagaag accaaagccg tgaacgtcaa gcccaagaac agccggggcg
5041 gcatcagatt ctgaaaggag tactaccatg actaagtatc tttacgcaat ccatgacaaa
5101 ctcgcaggta tctacagcgc gccttttgcc ctgaatccca agactgccca gagaaccttt
5161 gacttcatgg ccaaggaacg gaacgaacag gactgcaaag accagcgaat cgtgtacctc
5221 ggcatgtacg acgatgaaac tggtaccatt gtcatgactg acacaatcac cgaggtctac
5281 gacctggaga aagaatgggg ccgcaagcat gaaaattaag atttacctgc catacggacc
5341 gaagaagccc agaaaatgca gctgtgccgg aaacaaaact gaaccgcact atgtggagcg
5401 gtacaccgaa accggacatc cgtaccttgt aaaggacgga gaaaccgaca tcgtggccat
5461 catccagagc cataaagaag agtgcgatat caacctcatg ttgcagcggt acgcagcagg
5521 tgacaccagc gtcatgagaa atgatgcaaa gtacatcgat acgtccgaac tgcctactac
5581 catccacggc tacttcaacc tcatggctgc gcagagagaa aaattcaacg cacttccggt
5641 cgaaatcaaa cagaaattcg acaactcttt cgaggtctgg gcggcaactt ccggcacaga
5701 agaatgggtc gagaaaatgg gcctcaacca gaaaaagaca gagcctgaaa aggaggtaac
5761 caaca
//
