LOCUS MN379631 5148 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg4_164, complete genome.
ACCESSION MN379631
VERSION MN379631.1
KEYWORDS .
SOURCE Chicken microvirus mg4_164
ORGANISM Chicken microvirus mg4_164
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 5148)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5148)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5148
/organism="Chicken microvirus mg4_164"
/mol_type="genomic DNA"
/isolate="mg4_164"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720915"
/country="USA"
/collection_date="2017"
CDS join(4902..5148,1..20)
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82296.1"
/translation="MEDYPHTPERVKSYAASCDYRLDPVGAIANAPKRRNLGDVTAAQ
ALEGYSREQLQALSDALKAKFAELKAAGSSEPAPDVVKDGDENV"
CDS 1..1893
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82297.1"
/translation="MVMRMSERYKQPVVSGVTRFTNAPVSEIETSRMISPCYVTTTFN
GGDIVPVRAIEVLPRETYSIDVQATIRQLTMVAPTMDSLEVDLYAFFVPHRIVNESWK
AVQGENYTGAWVSPEVSLVPLLRENASDVQVPVGSVADHYDFPTQMPIPAEVLQQCND
LVFRGYLEIYNEFFRNQNYQPPIPYSKLNIYEGFFESWPSGSTSVSPDPSASLLGQPV
NFGPSVVPDGSPGAGAIAHAVLGSGGFYSSAGGSTVYGRSLTASSWTALSAPLKANKR
MDYFTSCLPSPQKGPAVTFSLSGTLPIAFDTGDDDVTFPSGKGFSFAFGSGSVPSPGA
ALVAGAGGGGVYVTSSSFQGTPAAHVVGFNLKAGADLSQVEIAPVSELRDAIAIQQVY
EQLARGGSRYREFINSFFGLDVEDPFSDIPVYLGHIRRGLDQYQTAQTSATSEGGTPQ
ATLAAFGYTNTSGKLFGPYTAKEHGYIHILAVVRHRNVYSSFMSRDKFRLKSLDWYNP
ILANLSEQPVYTRELNPFAPDPEGVVGYQEPWAEYRMDPDTVSGLMRPGVTGTLSVWN
YADDFDSGLTIVDGDWLKSNTAQVVARTTATSEASQPQFKARFALRIDRIFPGPTYSV
PGLDIV"
CDS 2394..3629
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82298.1"
/translation="MCLFPKANLNMNSVAYKKGVTEFECGCCPECLAKRARYWALRAA
YEAKEGPACMVTLTYDQYVRDGAGRIVGEALADRSVDKYDCQLFIKRLRKHFGNTKIK
YIITAEYGSRTHRPHYHAILFGVAWPDLVFYKKSKRGSVIYRSGTLEKLWHNGICTVD
AVSITAKVARYCTKYCAKDGRCDDTFMLFSRGVGEVGLLEDFNGRSYIIDGREYPVPR
TIWEKYITKNYPSEERSTWYFSLRDLGGDFELFDFWNKMRQNYRDFRDSLPLYQSYLA
YWREKAERYERSRPGVFERVLALPDDKYFGYKQQALLKLNGKRITTPRASARVMMNEL
RRHYIEVFHTLPFPPCHETADDTVEHGGIKFYRFSLKKVQKNCPFALDFSLEVCYSIV
NIPRRYIQDGIFRPSPSAH"
CDS 3803..4336
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82294.1"
/translation="MPQTNVINNGNIPQPITFADRGLFADWSNEGARNIAAEDWMREQ
QSLMLEHERNKEMFGLESSFSAEQAQMQRDFEERMANTEYQRAVKDMKAAGLNPILAY
QQGGNSVPSGSAASASASTSRSSGAGPGHKADTSAFAKAVLGLIGMAVTGSLSAISTV
SNKALNAARFAKIIPKK"
CDS 4441..4734
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82295.1"
/translation="MCGIRRMVLFSVLFRLRLNLFMKSIALVWPRLMMFLRFLSSISA
NITRGIFSAFRKLNRRKRKMKRYAVNPRGSVVRYGLRGHYVRVLNTRRGGICL"
ORIGIN
1 atggtgatga gaatgtctga acgctataag caacccgttg tatcgggtgt gactcgtttc
61 acaaacgcgc ctgtttcgga gatcgagacc tcgcgcatga tcagtccgtg ctatgttacc
121 accacgttta atggcggcga tattgttccc gtgcgtgcta ttgaggtgct gcctcgtgag
181 acgtacagta tcgacgtaca ggctaccatt cgccagctta ccatggtggc tcctactatg
241 gatagtttgg aggttgatct ttatgctttt tttgtccctc atcgtatagt caatgagagc
301 tggaaggctg ttcaaggtga gaattacacg ggcgcctggg tatctcctga ggtttctctc
361 gtccccctcc tccgtgaaaa tgcgtcggac gttcaagttc ctgtcggttc tgttgcagat
421 cattatgact tcccgacgca aatgcccatt cctgccgagg tattgcagca atgtaatgac
481 cttgtgttcc gcggatatct ggaaatttac aacgagtttt tccgaaacca aaactatcaa
541 cctcctatcc cgtattccaa gttgaatatt tacgaagggt tttttgagtc ttggccgtcg
601 ggcagtactt ctgtgtctcc tgatccttcg gcctcattgc ttggccaacc tgtcaatttt
661 ggcccttcgg ttgtccccga tggttcccct ggcgcaggtg ctattgcgca cgccgttctc
721 ggttctggcg gtttttactc ttcggcggga ggtagtacgg tttatggtcg ttcgcttact
781 gcgtcctcat ggactgctct ttcggccccg ttgaaggcta acaaacggat ggactatttc
841 acttcgtgct tgccgagccc tcaaaaaggc cctgccgtga ctttttcgtt gtcgggtacg
901 ttgcctattg ccttcgatac tggggatgac gatgtaacgt ttccctcggg caagggtttc
961 agttttgcct tcggcagcgg tagtgttcct tctcctggcg cggctcttgt ggcaggcgct
1021 ggcggcggcg gcgtttacgt taccagttct tcctttcagg gcactcctgc ggctcatgtc
1081 gttggcttta accttaaggc tggtgctgat ctttcgcagg ttgaaattgc gcccgtttct
1141 gaactccgtg acgcgatcgc gatccagcag gtctatgagc agcttgctcg cggcggcagt
1201 cgttaccgtg agttcatcaa tagctttttc ggccttgacg tagaggatcc gttcagcgat
1261 atccctgtat atcttggtca tatccgtcgt ggtcttgatc agtatcagac tgcgcagacg
1321 tcggccacca gcgaaggcgg tacaccccag gcaacgctcg ccgcgtttgg ctacaccaac
1381 acttcgggta agctttttgg gccgtatacg gcaaaggagc atggctacat ccatatcctt
1441 gcggtggttc gccatcggaa tgtttacagc tcttttatga gccgtgacaa gttccgtttg
1501 aagtctctcg actggtacaa tccgatcctg gctaatctct cggaacagcc cgtctatacg
1561 agagaactca acccgtttgc gcccgatccg gaaggagttg tcgggtacca ggaaccatgg
1621 gccgagtacc gtatggaccc cgacaccgta agcgggttaa tgagacctgg tgtgactggt
1681 acattgtctg tatggaatta cgcggatgac ttcgatagcg gccttactat cgtggacggc
1741 gattggttga aatcgaatac ggcgcaggtc gtggcccgta ctacggcaac gtcggaagcg
1801 tctcagccgc agttcaaggc tcgtttcgcc ctccgtatcg atcgtatctt ccctggacct
1861 acctactccg ttcctggctt ggatattgtg tgatagcaaa aaaaataggc ggggcaaaaa
1921 ccccgcctat ttttatacaa tgtcgtattc gccgtatttt ttataccatg tgtattcgta
1981 ttctgtgagt tcatatacgt caggcattac tccgccgttc tcttctatca tttcggcatt
2041 ggagttgtag cctaatgcat tggcaatgtc tgcgcatgta tcgcaggtta cgatagtccc
2101 aaagtcgttg attaagtagt gtttcatagt ttctcctttg cggctttttt gataataggt
2161 gtaaggtgcc gcgcgcctta cacctattac ctgcctataa tcacgctatg tagccattgt
2221 caagggttta agagtggaga ttttttcaaa gaaaaaatac aactcgcccc ttgacaatgg
2281 tgaaatagtg tgataatata accttgtagt tcgtgtcgcg cgtgcgtgca tatatatgtg
2341 cgtgcgcgtg cgtgcctcta tcgctttcaa tagtttatcg gagtaactct tttatgtgtc
2401 tttttccgaa ggcgaacttg aatatgaatt cagttgctta caaaaaaggt gtaacggaat
2461 tcgaatgcgg ttgctgccct gaatgcctcg caaagcgtgc gcgttattgg gctcttcgtg
2521 ctgcctatga agcgaaggaa ggccctgcgt gtatggtaac gcttacttat gatcagtatg
2581 tgcgcgatgg cgctggccgc attgtcggcg aagcgctcgc ggatcgttct gtcgataagt
2641 atgactgtca gctgtttata aagcgcctgc gcaagcactt tggtaatact aagattaagt
2701 acattatcac ggccgaatat ggttcgcgta cccatcggcc gcattatcat gctatattgt
2761 tcggcgtcgc gtggcctgat ttggtctttt ataaaaaaag taagcgcgga tctgtcattt
2821 atcgctcggg tacgttggaa aagctgtggc acaatggtat atgtaccgtt gacgctgttt
2881 cgataactgc aaaagttgcg cgttattgca ctaagtattg cgcaaaagac gggcgttgcg
2941 atgatacgtt tatgctcttt tcgcgtggcg ttggtgaggt aggtctgctc gaagacttca
3001 acggcagatc ctatattatc gacggccgtg aataccctgt tccacgtacg atttgggaaa
3061 agtatataac taaaaattat ccttcggaag agcgttcgac gtggtatttt tcgcttcgtg
3121 acctcggtgg agactttgag ctttttgact tctggaacaa gatgaggcag aattatcgtg
3181 actttcgtga ctcgctgcct ttgtatcaga gctacctcgc ttattggcgt gagaaggctg
3241 aacgttatga gcgttcgcgg cctggtgttt ttgagcgcgt attggccctg cctgatgata
3301 agtatttcgg ctacaagcag caagcgcttt tgaagttgaa cggtaagcgc attacaactc
3361 cgcgggcttc tgctcgtgtt atgatgaatg agttgcgtag gcattatatt gaagtgttcc
3421 acactctgcc gtttccccct tgtcatgaaa cggcagatga caccgtcgaa cacggtggca
3481 ttaagttcta tcgtttttcc ctcaaaaaag ttcaaaaaaa ttgtcctttt gctcttgatt
3541 tctcgctcga ggtatgttat agtattgtta acattcctcg gaggtatata caagatggca
3601 tttttagacc ttctccctcg gctcattgat ggtgcattaa ctgtactgtc ctttttggcg
3661 tgtgtcgtag tgtggcttcg tacgggcaat acacccgaaa aacttgataa aaagaggcgg
3721 aaaagccacg ttaaagctct tctccgcact caaaaagctg ttgagcagct tgctaagtat
3781 gaagatattg aggtgaagtt caatgccgca aacaaacgtg atcaataacg gcaacattcc
3841 gcagcctatt accttcgcgg atcgtggcct cttcgctgat tggtcaaacg aaggcgcccg
3901 caatatcgca gcggaagatt ggatgcgtga gcaacaaagc cttatgctcg aacatgagcg
3961 taataaagag atgttcggcc tggaaagttc tttttccgct gaacaggctc aaatgcagcg
4021 cgatttcgag gagcgtatgg caaatactga atatcaacgc gcagtgaaag atatgaaggc
4081 cgcaggcctt aaccctatcc tcgcctatca gcaaggtggc aactctgtcc caagcgggtc
4141 ggccgcgtct gcttcggctt cgacatcccg ttcgtcgggc gctggccctg gccataaagc
4201 tgatactagt gcgttcgcca aggctgttct tggactcatt ggtatggctg ttacgggctc
4261 cctttcggct atttctacgg tttcaaataa agctttgaac gccgcgagat ttgcaaaaat
4321 aattcctaaa aagtgaggtg ttttttgtgc caaatgattt gaacgaaaat gttttggatg
4381 acaaaacgga aggtgcattt ttgcacgacc ttgaaaatga tgtagtgtac actcttcgtt
4441 atgtgtggca ttcgtcggat ggttctgttc agtgttctgt tcagactgcg gttaaacttg
4501 ttcatgaaga gtattgcgct cgtttggcct cgtctgatga tgtttctgcg ctttttgtcg
4561 agtatctcgg cgaatataac ccgcggtatt ttttccgcat tcagaaaatt aaatcggagg
4621 aaaagaaaaa tgaaacggta tgcagttaac cctcgtggtt ctgtggttcg gtatggcctt
4681 cgtggtcatt atgtgcgtgt ccttaatacc cgccgcggag gtatctgcct gtgagtaatc
4741 tgaaaggtaa gtgccgcagg ctccattcga ctcttatcca gtcggatgtc gtcttgcgcg
4801 actattccac ggctttcgac ctggcttcga cgtatgagca gaagaagtat cctgagcttc
4861 atcgcaaggt tgtcgaaaac ggtattcaag acgttatcga aatggaagat tacccgcata
4921 cccctgagcg cgtgaagagt tatgcagcct cttgcgatta tcgtcttgac cctgttggcg
4981 cgatcgcaaa cgctcctaaa cgtcgcaatc ttggtgacgt gaccgccgcg caggctcttg
5041 aaggttattc gcgcgaacag cttcaagctc tttcggacgc gttgaaggct aagtttgccg
5101 aattgaaagc ggctggttct tctgagcctg ccccggatgt agttaagg
//
