LOCUS MN379633 4831 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg5_146, complete genome.
ACCESSION MN379633
VERSION MN379633.1
KEYWORDS .
SOURCE Chicken microvirus mg5_146
ORGANISM Chicken microvirus mg5_146
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 4831)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4831)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4831
/organism="Chicken microvirus mg5_146"
/mol_type="genomic DNA"
/isolate="mg5_146"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720918"
/country="USA"
/collection_date="2017"
CDS 1..1701
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82306.1"
/translation="MNHLFSMIPRAQIQRSTFDTSFTHKTTFNAGRLIPVYLEEILPG
DTVNCRVNALCRLISPLQVPVMDNVYLDFHFFFVPNRLVWEHWEEFNGQNSTTKGIQT
ADFTIPNYVYDASLVRDSSLHGYFGLPYKNPGTADGALIFANPLPFRAVWLIWNEWFR
DENLQDPVPVYLGDTGKIWEDDDEVVNGLTSSSLPYRNKRHDYLTSSLPWPQKGPGVE
LPLGGTAPVVGNGFTLGLRAIGNDTSDALNWGSLQYNATSGSSGFLGVSQYEAGGSVP
TPIEEGEAGVFLNKSQRLGVSTDPVNSGLVADLSTATAATINSLRQAFQLQRLYERDA
RGGTRYTEILRAHFGVVSPDARLQRPEYLGGFSQPMMINPVVQQSSTDSTSPQGHLSA
FGVAGTSRRGFVKSFVEHGFVIGFASIRADLSYQQGLNRLWSRKTRFDYYWPALAHLG
EQAVLNKEIFATGDNEADNAVFGYQERYAEYRYHPGIVTGKFNSNANGTMDVWHLAQK
FGQRPVLNSDFIREQPPINRISAVNIENTHAFALDVYFKQKATRAMPLYGVPGLVDHF
"
CDS 1719..2459
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82304.1"
/translation="MGLFSFVGDVWNDITGASGMQESSQNFSREMAQFARENAQNRYQ
WAAEDMQKAGLNPAMMYSNGGSWAGSPASVPSAGSTVGGGTAAMSSILGFLGNAVLGK
ISGQFDKTRAETDATKLTSAASAKSMEAQAARSAAEAAMAREDARVYASLPKEFRNFT
GMMRLVPGSTVSQILGLSLGGYNQAINSGLPSLIEALTGFGDDNSAKKVEQKRWTLET
ADDYYKRMRRENPVFKRMTDKYVERKRK"
CDS 2868..3752
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82308.1"
/translation="MKCTSPMSAWRFPGSSHIMFQLPRDVNPRELEHLQIPCGRCINC
RLERSRQWAIRCVHEAKQFKENSFITLTYSEDFIPKNKSLVKRDLQLFFKRLRKELGD
KKIRYFACGEYGPKTKRPHYHAVIFGEGFKERTKVTRRTDLGISQFYVSEVLTKVWPF
GIASCGDFSFEAAAYVARYCLKKVYGTRESFAEYEKTGREPEFVLMSRRPGIGAAWFE
KFGMTDVYPRDRVYSRGHLSKPPRYYDKLLEKVDAELLATLKMKRRQDAPELTPEQLW
RAGQAAKIRAEKFDREKF"
CDS 3897..4223
/note="Simialr to PHA00198"
/codon_start=1
/transl_table=11
/product="nonstructural protein"
/protein_id="QIR82307.1"
/translation="MKLYSLYDSRAGMYLPPFVARNAELAKRLVAASLLNAKDIPPAE
YPADFNVFEVAEFDEEKGFLPLPGGQVNIGNVLAILTDFRRRMAQANAVSENPEKENE
YDADHV"
CDS 4198..4707
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82305.1"
/translation="MNTMPITFKSFYGRSEEDKVDVWVSDEPSQTLQEFKDEADINNL
VARYKQTGAFYDALAARNLGVQPRVPIFEDVSEIPDFAAAQEVINQGKEAFAALPPSV
RSAFSNSPDLFLAFMTENAKNPEALRKVGLLAAQQTQSAAGVQGIKSPATVETAPQQS
AGASENASE"
ORIGIN
1 atgaaccact tgttttctat gattcctcga gcgcagattc agcgttcgac tttcgacact
61 tcgttcacgc ataagaccac ttttaacgct ggtcggttga ttcctgttta cctggaagag
121 attcttcctg gcgatacggt taattgccgg gttaatgcgc tttgtcgctt gatttcgccg
181 cttcaggtgc ctgtgatgga caacgtctat cttgatttcc acttcttctt cgttcccaat
241 cgtcttgtct gggagcactg ggaagaattt aacggtcaga attcgacgac gaaaggcatt
301 cagacggcag atttcacaat tcctaactat gtttatgatg cttcgctcgt ccgcgattcc
361 tctcttcatg gctacttcgg tcttccttac aaaaaccctg gtaccgctga tggtgctctg
421 attttcgcca atccgctgcc ttttcgcgcg gtgtggttga tttggaatga atggttccgc
481 gatgaaaatc ttcaggaccc cgttcccgtt tatcttggcg ataccggcaa aatttgggaa
541 gatgacgatg aggtggtgaa tggtctcact tcgagctcgc ttccttatcg aaataagcgt
601 catgattact tgacttcttc gctcccgtgg ccgcagaaag ggcccggtgt tgagctccct
661 cttggcggca ctgcgcctgt cgtcggaaat ggctttaccc ttggacttcg tgcgattggc
721 aatgacacct ccgacgcatt gaattggggt tcacttcagt acaatgcaac ctcgggctct
781 tcgggttttc ttggtgtttc tcaatatgag gctggcggtt ctgttcctac gcctattgag
841 gaaggtgagg caggtgtttt tcttaataag tcgcagcgtc tcggcgttag cacagaccct
901 gtaaactcag gtcttgttgc cgatttgtcg accgcgaccg ccgcgacgat taattcactc
961 cgacaggcct tccagctcca gcgtttgtat gaacgcgacg ctcgcggcgg aacccgctat
1021 actgagattc ttcgcgctca ctttggcgtt gtatcgcccg atgctcggct ccagcgacct
1081 gaatatctcg gcggattttc gcagccgatg atgattaatc ccgtcgttca gcaatcgtct
1141 actgattcga cctcgccgca gggccatttg tccgcgtttg gtgtggcagg cacttcccgc
1201 cgtggatttg tgaaatcgtt cgttgaacat gggtttgtta tcggtttcgc ttcgattcga
1261 gctgatttga gctatcagca aggtttgaat cgtctttggt cgcgaaaaac tcgatttgat
1321 tactactggc ccgcgctcgc gcacctcggt gagcaagctg tgttgaataa ggaaattttc
1381 gccacgggcg acaacgaagc tgataatgcg gttttcggct accaggaacg ctatgcggag
1441 tatcgttatc accctggaat tgttactggg aagttcaatt cgaacgctaa tggtactatg
1501 gacgtttggc atcttgcgca aaaattcggt caacgccctg ttctcaattc ggattttatt
1561 cgcgagcagc cgccgattaa tcgcatttca gcggttaata ttgagaatac gcacgctttt
1621 gcgttggatg tttatttcaa gcagaaggcg acgcgcgcta tgccgcttta cggagtgccc
1681 gggctcgttg accatttcta agctaggagg aaaaagtcat gggtcttttt tcatttgtcg
1741 gagatgtttg gaatgatatc acgggtgctt ctggaatgca ggagagttct cagaacttct
1801 cccgcgaaat ggcgcagttc gcccgtgaga atgctcaaaa tcgctatcaa tgggctgctg
1861 aagatatgca gaaggcaggt ttaaatcctg ccatgatgta ttcgaacggt gggagctggg
1921 ctggcagccc agcctccgtt ccttcggctg gttcgaccgt cggcggcgga acagccgcca
1981 tgagttcaat cctcggtttc ctcggcaacg ctgtacttgg taagatttca ggccagtttg
2041 acaagacgag agctgaaact gatgccacga aattgacttc tgcagcttcg gctaaaagta
2101 tggaggccca agccgcccgt tcggcggctg aggcggccat ggcacgcgaa gacgcccgcg
2161 tttacgcttc gctccctaag gagtttcgca attttactgg catgatgcgt ttggttcctg
2221 gttctaccgt ttcgcagatt ttagggcttt cacttggtgg ttacaatcaa gcaataaact
2281 cagggcttcc cagtctcatt gaggctttga ctggctttgg cgatgacaat tcagcgaaga
2341 aggttgaaca aaaacgctgg actcttgaga ctgcagacga ttattataag cgaatgcgtc
2401 gtgaaaaccc tgtttttaag cgaatgactg ataaatacgt cgaaaggaaa agaaaatgaa
2461 taatatttgg aattttttgt tgaaaatcct caacgaaggt gataacaaga aaatcgccgc
2521 cgctggaaaa gacctcgaac attggaggtc gccaggcatg gcacatgatg ttggtcgtgt
2581 catgagctct gctaaagact ttgtaactga tttttggaaa tgacttgtta aacgacatta
2641 aacaactgag aaaatgagta agattttgca tattttgatt aaagtgataa ccttgggcat
2701 tattgatttg ctcaaaagaa aagcccgaga ggaggtgaat gacgatggca aagagacgcc
2761 cgatgtcgcg cagaaaaagt aagcggctgt tcacgaacac cgcgttgaac gtgcatccga
2821 agaatcttaa agctgtgccc atgcgtggag gctttagaat ttaagcgatg aaatgtactt
2881 cgcctatgtc agcctggaga tttccaggct cttcacacat aatgttccag ctcccgagag
2941 atgttaatcc tcgggagttg gaacatttac aaatcccttg tggcagatgt attaactgtc
3001 gtcttgagag gtcaaggcaa tgggcaatcc gatgtgtcca tgaggctaag caattcaagg
3061 aaaattcgtt catcaccttg acctattccg aggatttcat cccgaaaaac aagagcttgg
3121 ttaaacgaga tttgcagctt tttttcaaga ggcttcgaaa agagcttgga gacaagaaaa
3181 tccgctattt cgcctgtgga gaatatggcc caaagacgaa aagacctcat tatcacgcag
3241 taattttcgg cgaaggtttt aaagagcgga cgaaagtaac gagaaggact gatttaggaa
3301 ttagccagtt ttacgtttcc gaagttctaa cgaaagtttg gccgttcggc atcgcaagtt
3361 gcggtgattt ttcgtttgaa gctgcggcat atgtcgccag atattgcctg aagaaagtct
3421 acggaactcg tgaatctttt gctgagtacg aaaaaacagg cagagagccc gagtttgtgc
3481 tgatgtctcg tcgtcctgga atcggtgctg cttggtttga aaagttcgga atgacagatg
3541 tttatccgcg agacagagtt tatagtcgtg gtcatttgtc aaagccaccc cgttattatg
3601 acaagttgct cgagaaagtt gacgccgagc ttttagcgac gctcaaaatg aaacgtcgtc
3661 aagacgctcc cgagcttacg ccagagcagc tttggcgagc aggacaagcc gctaaaattc
3721 gtgcagaaaa attcgacaga gagaaatttt gagttgactt tttgaattca atgtctattt
3781 tcgtttttgt cttcagtggg gtttgtgcgc taagcaagtg ccaaccgtgg ttttgagatg
3841 aggggttcct cgctgaagac ctttgaattt ccctataacc acaaaatcaa aatcatatga
3901 agttgtatag tctatacgat tcccgagcgg gtatgtacct cccgccgttt gtcgctcgca
3961 acgccgagct cgcaaaacgc cttgtcgcgg cgtctttgct caatgccaag gacattcccc
4021 ccgccgaata tcctgccgac ttcaacgttt ttgaagttgc ggagttcgat gaagagaaag
4081 gcttcctgcc gcttcctggc ggtcaggtga acattggaaa cgttcttgcc attttgaccg
4141 atttccgtcg gcgaatggca caggcgaacg ccgtttctga aaaccctgag aaggaaaatg
4201 aatacgatgc cgatcacgtt taagagcttt tatggacgtt ctgaagagga taaggtcgac
4261 gtctgggttt ccgatgagcc ttcgcaaact cttcaggagt ttaaggacga ggcggatatc
4321 aacaaccttg ttgcacgcta taaacagact ggggcgtttt atgacgccct cgcggcgcga
4381 aatcttggag ttcagccgcg cgttccgatt tttgaggatg tctcggaaat ccccgatttt
4441 gccgctgcgc aggaagtcat taatcaaggc aaggaagcgt ttgcggctct tccgccgtct
4501 gttagaagcg cgttcagcaa ctcgcctgat ttgttcctcg cgttcatgac ggaaaatgca
4561 aagaatcctg aagccctccg taaggttggg cttcttgctg cacagcagac gcagtctgct
4621 gctggggtgc aggggataaa atcccctgct actgtcgaaa ccgcgcctca acagagcgca
4681 ggagcgtccg aaaatgcttc ggaataatga gacatttcgc gcgcccttta ctgtaaatcg
4741 tcagtgggca caaaagcttc ccttgttgta attgtgccca ctgacaccag atgaaaccga
4801 ttctcaataa taaaccgtaa tttttagtat t
//
