LOCUS MN379634 5058 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg6_154, complete genome.
ACCESSION MN379634
VERSION MN379634.1
KEYWORDS .
SOURCE Chicken microvirus mg6_154
ORGANISM Chicken microvirus mg6_154
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 5058)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5058)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5058
/organism="Chicken microvirus mg6_154"
/mol_type="genomic DNA"
/isolate="mg6_154"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720919"
/country="USA"
/collection_date="2017"
CDS 1..1695
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82311.1"
/translation="MSRTSASGSLYRNRVAGHFAQAPQAMIGRSTFKRSHGYKTTFSA
DYLYPFLCEEVLPGDTWQVKSTGVVRVEAMLKPIMDNLYLDTFYFFVPNRLIWDNFQR
FMGEQDSPGDSIDYLLPVVLYDSSFVNGYSKSLSLWDYFGLPVSGSTNEKVGGVLQNI
TSLPFRAYALVWNQWFRDENLQDSVSFNKGDGPDNSFNLNFNILKRAKVHDYFTSALP
WPQKGPAVDIPLGDVAPLSIYDISTAGNIDPSTWTKTYGYVATKTYVTAPAINGAVNT
DGANGSAGVKGSSTAGAGSWKNDSSTTHILGADLTNATATSINSLRQAFQLQKFYERM
ARGGSRYIEILRAHFGVISPDARLQRSEYLGGGSSPMQFSVVAQTSSTDTTSPQGNLS
SFGVVGGNVGGFTRSFVEHGWIIGLFNIRADLTYQQGVNRKWTRRTREDFYWPSFAHL
GEQAILNYEIYAQGMDADNDVFGYQERYAEYRYAQTVVTGEMRSSYAQSLDIWHLAQD
FESLPVLNGSFIESSVPMSRVVAVSSRPPFIGDFWHDIKCTRPMPLFGTPGLVDHF"
CDS 1782..2810
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82309.1"
/translation="MAFGLDDAIIGSAVIGAGASLFGAHKSASSAEAVNAAQLAFARE
SAQNKYQWSVKDMEKAGLNPKLAGTQNASVTGAQVPNLRNPGDAWAVAGNAISNMIPS
AASALAALRNAEVNKANQVVNDRESMNKWMTGEYERHLLGEQAQLVASQRRWYDRLTN
DAPYQRALWAANKGMYDSQARYNSALTYSEGYRANVFKRQSQLLGRQIDLTPFEQERL
QTLSAKNRAEVDLYDRQQDKMLTEMDHLRALRDKAYSDRDLNRARELNLQIDTKYKEL
IYGRDYWKFHDTGEFYRKNRWKIPFDEYTDSAQKVMDLIDTATDQVSKFLPKSSGPSK
TFNFNIKR"
CDS 3336..4241
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82313.1"
/translation="MPCYHPIEIWKYLHGPNRGEVTLKRPWRASQDWDGHNHFFVPCG
KCVGCRLRRSREWAVRIMHERRYHDEACFITLTYDPEHLPADGSLDKKHLQDFWKRLR
SKVGKVRYFACGEYGTNLGRPHYHAAVFGWTPPDVVACGFGGNGDRIYSSAFLDSVWT
YGKTVVGELSFASAAYVARYVTKKVYGDDSESHYNGKVPEFLVMSRRPGIGETFTSDY
GKQLLNNDFVVIDNQRFNLPRYYDKKIALQDEIQYGNIKAERVRKALAVPRDAPSRLA
QRELYRTLKSKLLERGFENGTNHDF"
CDS 4219..4521
/note="Simialr to PHA00198"
/codon_start=1
/transl_table=11
/product="nonstructural protein"
/protein_id="QIR82312.1"
/translation="MEQTMISEADAPLVGLYGVKDLKADVITFVFCEQTPHSAIRSFG
STCRDPKGMFAQFPDDFALVHLGWVSKRGMLMPFDAPLQLATARDFVGPAAVDSNA"
CDS 4536..4973
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82310.1"
/translation="MKFYTGFDRPPRAGYACTGGSMTAQEFKQDCDINHIVKRAQRTG
TIPIVPREVMYGEEDETAGDLRAKMDMINDIKAHFDSLPSDIRLHFNNDALAFNAWVI
NPDNYNEAVKLGLVKPVEGYGDASPVPAVPGADAKPAVDATGD"
ORIGIN
1 atgagtagga cttctgcctc tggctccctt tatcgcaacc gcgtggccgg tcattttgca
61 caagcaccgc aagctatgat tggccgttcc acctttaagc gttctcacgg ctacaaaact
121 acctttagtg ctgattacct ttatccgttc ttgtgtgagg aagttcttcc cggcgatact
181 tggcaagtca agagtactgg cgttgttcgt gtcgaggcta tgctaaagcc tatcatggac
241 aacctctacc tcgatacgtt ctatttcttt gttcctaata gacttatttg ggacaatttc
301 caacgtttta tgggtgaaca agatagccct ggtgattcta ttgattatct cttgcctgtt
361 gttttgtacg attccagttt tgtcaatggt tattctaaat ccctttctct ctgggactat
421 tttggccttc cagtttctgg ttctactaat gagaaagtcg gcggtgttct tcagaatatc
481 acctctttac cgtttcgtgc ttacgctttg gtttggaatc agtggtttcg tgatgaaaac
541 ttgcaggatt ctgttagctt taataagggt gacggtcctg ataactcgtt caacctcaat
601 tttaatattc tcaagcgtgc taaggttcac gactatttca cttcggcctt gccctggcct
661 cagaagggtc ccgccgtcga tatcccgctc ggtgatgttg caccgttgag tatctatgat
721 atttcgactg ccggcaatat tgacccgtct acctggacta aaacctatgg ctatgttgct
781 acgaagactt atgttacggc acctgctatt aatggcgcgg ttaatactga cggcgctaat
841 ggctctgccg gtgttaaagg gtcttctacc gccggtgccg gaagttggaa gaatgatagc
901 tctacgactc acattcttgg tgcggatctg acgaatgcta cggctacgtc tatcaactct
961 cttcgtcaag ccttccagct tcagaagttt tatgagcgta tggcccgtgg tggctcccgc
1021 tatattgaga ttcttcgtgc tcacttcggc gttatctctc cggatgcccg ccttcagcgt
1081 tctgaatatc ttggtggtgg ctcttcgccg atgcaattca gtgtggttgc tcaaacctcg
1141 tcgactgata ctacctcgcc tcagggtaat ttgtcctcct tcggtgtcgt cggtggcaat
1201 gtcggcggtt ttactcgctc ctttgtcgag cacggttgga ttatcggctt gttcaacatt
1261 cgcgcggatt tgacctatca gcaaggtgtt aataggaagt ggacgcgtcg aactcgtgaa
1321 gacttctatt ggccatcttt cgctcacctt ggagagcaag ctattctcaa ttatgagatt
1381 tatgcacagg gtatggatgc tgataatgac gtgttcggct atcaggagcg ctatgcagag
1441 taccgttacg cgcaaaccgt tgtgactgga gagatgcggt cttcctatgc acagtccctt
1501 gatatctggc atctcgcgca agatttcgag tcgcttcccg tgctgaacgg gtcgtttatc
1561 gagtcttctg ttccaatgtc tcgtgttgtg gccgtgtcta gtcgtcctcc ctttattgga
1621 gacttctggc acgatatcaa gtgtacccgg cctatgcctc tgttcggcac gcctggcctc
1681 gttgatcact tctaactagc ggtaagggtt ccctactgac ccgcgggccc ccccaaaaag
1741 cccgcggata gtcagtaggg accgcgtact acggggttat tatggctttt ggtttagatg
1801 atgctattat tggtagcgct gtaattggtg ccggtgcctc ccttttcggt gctcacaaat
1861 ctgcctcctc tgcagaggct gtaaatgctg ctcaattggc ttttgctcgt gaatcggcgc
1921 aaaataagta ccaatggtcg gtcaaagaca tggagaaagc cggtctcaat cctaagttgg
1981 ccggtactca aaatgcctct gttactggcg ctcaagtgcc taacttaaga aatcctggtg
2041 atgcttgggc cgttgcaggt aacgctatct ccaatatgat tccgtcggct gctagtgcct
2101 tggcagcgct tcgcaatgca gaagttaata aagctaacca ggtcgttaac gaccgtgaat
2161 caatgaataa gtggatgact ggagagtatg agcgccattt gcttggtgaa caggcacaat
2221 tggtagcctc tcaacggcgt tggtatgacc gactcactaa tgacgctcct tatcagcgcg
2281 ctctttgggc cgctaataaa gggatgtatg actcacaggc tcgctataat tctgccttga
2341 cctattctga aggttatcga gctaatgttt tcaagcgtca gagtcaactc ctaggtcgac
2401 aaattgatct gactcctttt gagcaagaac gtttgcaaac tctctcggcc aagaatcgtg
2461 ctgaagttga tttatatgac cgtcagcaag ataaaatgct cacggaaatg gatcatcttc
2521 gagccttgcg cgataaagcc tatagtgacc gtgatttaaa ccgtgcccgt gaacttaatc
2581 tacaaattga tacaaagtac aaagagttga tctatggtcg cgattattgg aagtttcatg
2641 atactggcga attctatcgt aaaaatcgtt ggaagattcc ttttgatgag tatacggatt
2701 cggcccaaaa ggttatggat ttgattgata ctgcgactga ccaggttagt aagtttcttc
2761 ctaagagtag tggccctagt aagactttta attttaacat caagaggtaa gtatgaaata
2821 cgttattatt gttctgaagg ttatttttgg ccttctttcg ttcgttaagg aaaaaaaaga
2881 ggaaaaagaa aatggcaaag cgtcgtaaaa tgtcccgtaa gggctcccgt aaactgttta
2941 ctgctaccgc caaaggttct aagactaaag caattaatct tgcgccccct atgcgtggtg
3001 gtatccgtct ttaagtgttc cacgtggaac acctttgata gggtgggtgt tccacgtgga
3061 acaccctttt ttgttgataa cttgtctata acctgtcgat tgtctgttaa gtgatgttga
3121 taattttggc ctttttttgg ctatttttga acttttcgat tttttcgaat agttttcaac
3181 aagcattaac aattcactga caggtttttt aacaggttaa aagttcgatt tctcaatgag
3241 atagttcaaa aaaatggact tatcaacaga aaaaagtttt cctactacta ctatatataa
3301 tttatattaa tccttgttaa taatggagaa ttgaaatgcc ttgttatcat cctattgaaa
3361 tctggaagta cctccacggt ccaaatcgcg gcgaagtcac cttaaagcgt ccatggcgtg
3421 cctcacagga ctgggacggt cacaatcatt tcttcgtgcc ttgcggtaag tgtgttggtt
3481 gtcgccttag acgctctcgc gaatgggctg tacgtatcat gcatgagcgt cggtatcacg
3541 atgaggcttg ttttatcacc cttacttatg atcccgaaca tctccccgct gatggttccc
3601 tcgacaaaaa gcacctgcag gacttttgga aacgattgcg ctctaaggtt ggtaaggttc
3661 gttattttgc atgcggagag tatggcacca atcttggtcg accacattat catgccgctg
3721 tttttggttg gactcctccc gatgtcgtgg cttgtggttt cggaggaaat ggtgatagga
3781 tttattcctc tgcctttttg gactctgtgt ggacgtacgg taaaactgtg gtaggtgaac
3841 tatccttcgc ttcggctgcc tatgtggcaa ggtatgtgac gaaaaaagtt tatggagacg
3901 attcagagtc ccattataat ggtaaggtac ccgaatttct tgttatgtct cgccgtcctg
3961 gcattggtga aacttttacc tctgactatg gtaaacagtt attgaataat gattttgtag
4021 ttattgataa tcaacgattt aatttaccta ggtattacga taaaaaaata gctttacaag
4081 atgagattca atatggtaat attaaggcag aacgtgtaag aaaagcgctt gccgttcctc
4141 gtgatgcacc tagtcgtttg gcgcaacgag aactttaccg tacgctcaag tccaaactct
4201 tagagagagg attcgaaaat ggaacaaacc atgatttctg aagctgatgc gcctttggtt
4261 ggcctttacg gtgttaagga cctcaaggcg gatgttatca ccttcgtctt ttgtgaacag
4321 actccgcatt ccgcaattcg ttctttcggc tccacttgcc gtgatcccaa ggggatgttc
4381 gcacagttcc ccgatgattt cgccttggtg catctcggtt gggtgtccaa gcgcggtatg
4441 ctgatgccgt tcgatgctcc tcttcagctc gctactgcac gtgattttgt cggccctgcc
4501 gccgtggatt ccaacgctta aatataggtt gaatcatgaa gttttacact ggatttgacc
4561 gccccccccg tgcaggctat gcctgcacgg ggggctctat gacagctcaa gagtttaagc
4621 aggattgcga tattaaccat atcgttaagc gcgctcaacg tactggtacg attcctatcg
4681 ttcctcgcga agtgatgtat ggagaggaag atgagacggc cggtgatctt cgcgctaaga
4741 tggatatgat taatgacatc aaagcgcatt ttgacagtct tccctctgat attcggcttc
4801 actttaataa tgatgcgctc gcgtttaacg cgtgggttat caatcccgat aactacaatg
4861 aggctgttaa actcggcctt gtcaagcctg tcgagggtta tggtgatgcg tctcctgtac
4921 ctgccgtgcc tggcgcggat gctaaacccg ctgtggacgc aacgggtgat taagggtcag
4981 ttggcgtata cttctacttg atatatatac gccaactgac aacgcaatga tttttagtaa
5041 tttatttgga gaaaaatc
//
