LOCUS MN379635 4510 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg6_218, complete genome.
ACCESSION MN379635
VERSION MN379635.1
KEYWORDS .
SOURCE Chicken microvirus mg6_218
ORGANISM Chicken microvirus mg6_218
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 4510)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4510)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4510
/organism="Chicken microvirus mg6_218"
/mol_type="genomic DNA"
/isolate="mg6_218"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720920"
/country="USA"
/collection_date="2017"
CDS join(4239..4510,1..4)
/note="Simialr to PHA00198"
/codon_start=1
/transl_table=11
/product="nonstructural protein"
/protein_id="QIR82317.1"
/translation="MTVNAYSIYDKAAGTFATPFFAVNDQVAKRNFRFSLNKLSDLFI
ADLELHLVGAFDVEDGSFDNDFGYTVDTGENVLSEREIEKKNSEVKQ"
CDS 1..1689
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82316.1"
/translation="MKSSVYRNGQTAYIGRIARTKFQKPLKSVKTSMTIGKLYPVRWE
EVLPGTNWKSDTSFTCTLTSAYLRPVKDDLFIDHYTFFVPLRLLMDDLENVFGNSNPS
AYTDGGLIEIPSTTSVQTVSSKSVADYLELPVGSVPPGISILPFRAFALIYNEWIRNQ
QVEGEVVIQKGDTVASSEKFNNDAWSPSNYTGKLPNVTRLKDYFSVAVPSPQKGEAVP
LGLSAGFLPLDVSPDGQGHNFTGSNVPLVWFSDSYPSTDFVPIVADMAQGSLDAYPYG
TLIGNSSIRGSHVDTQKLVGSNLGVDGSVIQSANVNDLRLAFALQRMQELDIFGGRYR
EYLLAHYNVNNGDARMQVPEFLGGKRCPLFNQTVAQTSQPSADSPLGALAGFSDTAEA
RSGAFSKAFTEHGYIMTIACIRQRHTYQQGINVKWTRTQRSDFYDPCFAHIGNQPIWQ
SELFGTGKTDLHDNVFGYKEAWSEYKQSFNVVSGEARSAAPNSLDLYHFADNYASAPV
LGQQFIEETDDYVARCLAVDPSEQDPFFVDWCFRDTVTLPMPVNCDPGLIDHRG"
CDS 1707..2237
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82314.1"
/translation="MPSANYVAQSGQFYGGIVQGNPTGGVMTGIDRAIGNAVTGDIDY
ARQLESLGFQNAFNASEAQKQRDFEERMSNTAYQRAVADMRKAGLNPYLAYSQGGAST
PTGYASTSGSGVASRSMSDNFVKLLGNLVNLVAGMATTSMKTSAQLASTATKANSAIT
VANTAQERHVYHYNRR"
CDS 2663..3520
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82318.1"
/translation="MCLYPKYLRNGRFIGWLEHPLDSDVPVPCGKCIECLSQKGSEWS
YRVMREFDYYGRIGCVMSLTYDNAHLPVDGSVNRRDLQLFLKRLRKHIAPVKLRYFGC
AEYGILNGRPHYHLVVIGWQPDDLVFVRRSKKNTMLYRSKTVEKIWSQGICAVAAVTA
DSVKYSAKYMQKIYFDETSDRTPPFLTMSTHPGFGAFEALDRVKSDSIYVNGVRKKVP
RYYLKVAEREGVDLSELKEKRITTAKIMSEVVSDSVKVRRKKFEDKIRRDVSSKKYID
KFCGICYDD"
CDS 3711..4160
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82315.1"
/translation="MKYRVASYREKEEPKATTYVMEVPQYRLNKQTGELVELPTKKNL
QEALNSFRDVALTDVIERYMPVDQSAESPVLEAFEYNSDRLDALLIASEYANELRKKY
GYSDTATLSDMIADLQAKNAKIVQTIKNATVKEDLKNEGKENVAQEQ"
ORIGIN
1 atgaaatctt cggtttatag aaacggtcag accgcctaca taggcaggat tgcccgtact
61 aagtttcaaa agccgttgaa atcggtcaaa acttctatga ccattggcaa actgtacccc
121 gtgcgttggg aagaggtact gcctggaacg aactggaagt ccgacacgtc ttttacgtgc
181 actttgactt cggcttactt gcgtcccgtt aaggatgacc tgttcattga ccactacacg
241 ttctttgtgc cgttgcgttt gctgatggac gaccttgaaa acgtgtttgg taactctaac
301 ccgtccgcct atactgacgg cggtttgatt gagatacctt ctacaacctc ggtgcaaact
361 gtatctagta agagcgttgc cgactatctg gaattgcctg tcggtagtgt tcctcctggc
421 atttcgattt tgcccttcag agcgtttgct ttgatataca atgagtggat tcgtaatcaa
481 caagtcgaag gtgaagtcgt gattcagaag ggtgatacgg tagcatcttc tgaaaagttt
541 aataacgacg cttggtcgcc cagtaactac actggaaagt tgccgaacgt aacacgtctt
601 aaggactatt tcagcgttgc cgtaccttcc ccacaaaaag gcgaagccgt tccgcttggt
661 ttgtcggcag gctttttgcc tttggacgtg tcgcccgatg ggcaggggca taattttaca
721 ggtagtaatg ttccattggt atggtttagt gatagttatc cctctactga ttttgtacca
781 attgttgcgg atatggcaca aggtagttta gatgcttacc cgtatgggac tcttatcggt
841 aattcatcta ttcggggtag tcatgtcgat acacaaaaac ttgttgggtc aaatcttggt
901 gttgacggta gtgtcattca atctgcaaac gtaaatgatt tgcgtttggc atttgctctt
961 cagcgtatgc aagagttgga catttttggc ggtcgttacc gcgaatattt gcttgctcat
1021 tacaacgtga ataacggcga cgcacgtatg caagtgcctg agttcctcgg tggtaagcgt
1081 tgcccgctgt tcaatcagac tgttgcacaa acttcgcaac cttctgcaga tagtccgttg
1141 ggtgcacttg caggcttttc tgatacggca gaggctcgca gtggtgcttt ctctaaagcg
1201 ttcaccgaac acggctacat tatgactata gcctgcatca gacaacgcca tacgtatcag
1261 cagggcataa atgtaaagtg gacacgcacc cagcgttctg acttctacga cccgtgcttt
1321 gctcatatcg gcaatcagcc tatttggcag tcggaattgt ttggaacggg caaaaccgac
1381 cttcatgaca acgtgttcgg ttataaagag gcttggtcgg agtacaaaca gtctttcaac
1441 gttgtatctg gtgaggctcg tagtgctgct cctaacagtc tggatttgta ccactttgcc
1501 gacaactacg caagcgcgcc tgtgcttggt cagcagttca ttgaagaaac tgacgactat
1561 gttgccaggt gtttggcggt tgaccccagt gagcaagacc cgttcttcgt ggactggtgc
1621 ttccgtgata cggtaacatt gcctatgcct gtcaactgcg accctggttt gattgaccac
1681 agaggctgac ctcggaggtg aaaaaaatgc caagtgcgaa ttatgttgcc caaagtgggc
1741 aattttacgg tggtatcgtg cagggtaatc ctactggcgg tgttatgact ggtatcgata
1801 gggctattgg taatgctgtt actggcgata tcgactatgc ccgccagctt gaaagcctcg
1861 gctttcagaa cgctttcaac gcatcagaag cgcaaaagca acgtgatttt gaagagcgca
1921 tgtcgaacac cgcatatcaa cgtgctgtcg ctgatatgcg taaagcaggc ttgaatcctt
1981 accttgctta cagtcagggt ggtgcgtcta ctcctactgg ctacgcctct acttctggta
2041 gtggtgttgc atcccgttct atgtcggata actttgtcaa acttcttggc aaccttgtga
2101 accttgtcgc aggtatggca acgacttcga tgaaaacgtc cgcacaactt gcttcaacgg
2161 ctactaaggc gaacagtgct attactgttg caaatactgc ccaagaacgt cacgtatatc
2221 attataatcg tagataacgc tctcgaagtc agttttgcga cgtagccagc cccactctct
2281 tacccagctc taaccagttc tatataggca ggggcggtgt gtttccgccc cccctatatc
2341 agcggggatt ttatgcggcc gcaaaaaagc gtactacggc acagcaggca cgcagtgcca
2401 caccgtaggt gttaccccgt caggggtgct gggtcgagat agcggtgccc cgatgctcta
2461 atcttgtatt gtgtcccatt cgcgctttgg ttgggtgtgg ctggcacgta gtgcctggta
2521 aagcgcgaat tgggacatta tatcaaaccc gtaggggcag gccggtttga agcgaagcgc
2581 actttgcccg gcctactttc tatagcgcat acttcttgtt taatatgtgc ccattgacac
2641 cgaggttgtt gaggtgataa aaatgtgttt gtatccaaaa tatttgcgaa acggtaggtt
2701 tattggttgg ttggaacacc ctcttgatag tgatgtcccc gtaccttgcg gaaagtgcat
2761 tgaatgtctt tcgcaaaagg gttccgaatg gtcataccgt gtaatgcgtg agtttgacta
2821 ctacggtcga atcggttgtg taatgtcgtt gacttatgac aacgctcatt tacccgttga
2881 cgggtctgta aatcgtagag atttgcagtt gtttctgaag cgattgcgta agcatattgc
2941 gcctgttaaa ctccgttatt ttggttgtgc cgagtatggg attctgaacg gtcgtcccca
3001 ttatcatctt gttgttatcg gttggcaacc cgatgaccta gtatttgtta ggcgttcgaa
3061 aaagaataca atgttgtatc ggtcaaaaac tgttgaaaag atttggtcgc agggcatttg
3121 tgcagttgct gccgttacgg ctgatagtgt taagtattcg gcgaagtata tgcagaagat
3181 atactttgac gagacttctg acagaactcc gccttttctg actatgtcga cacaccctgg
3241 tttcggagct tttgaggctc ttgaccgtgt gaagtctgac agtatctatg taaacggcgt
3301 tcggaagaaa gttccccgat attacttgaa agttgcggag cgtgaaggtg ttgacctttc
3361 agaacttaaa gaaaagcgaa ttaccactgc caaaattatg tcggaagttg tttctgatag
3421 cgttaaagta cgtcgaaaga agtttgaaga taaaatccgc cgggacgttt cgtccaaaaa
3481 gtatattgac aagttttgtg gcatatgtta tgatgattaa gggggtgatg atatgacttg
3541 gacatagtgt tttgtgtaaa tttagttaaa aagtgaggtg atttaatttg aacgacaatg
3601 ttttggaact tattgagtat ctgataccag ttattgttgg tatcataact tgcattatta
3661 cgtttgtgcg tactggcaag attaagaata taaatgatga ggtgaaagaa atgaaatatc
3721 gtgtcgcttc ctatcgtgag aaggaagaac ctaaagcaac tacctatgta atggaagttc
3781 cgcagtatcg tctgaacaag cagactggcg aacttgttga gttgcccaca aaaaagaacc
3841 tgcaagaggc attgaactct ttcagagacg ttgccttgac tgacgttatc gaacgttata
3901 tgcccgttga ccagtctgcc gagtcgcctg tccttgaggc tttcgagtac aattccgaca
3961 ggcttgacgc gttgttgatt gcgtctgagt atgctaacga actccgcaag aagtatgggt
4021 actctgatac cgctactttg agtgatatga ttgccgattt gcaggcgaaa aacgcaaaaa
4081 ttgttcaaac aatcaaaaat gctacagtta aggaggattt gaaaaatgaa ggcaaagaga
4141 atgtcgcgca ggaacagtaa acgctatttc cgtaagggcg tgaaacgtat acacaaaaag
4201 aacctgagaa aggtattgtc tagaggaggt tattcgctat gactgttaat gcttatagta
4261 tttatgataa ggctgctggg acgtttgcta ctccgttttt tgctgttaat gaccaggttg
4321 cgaaacgtaa ttttcgtttt agtttgaata agcttagcga tttgtttatt gcagatcttg
4381 aattgcatct tgttggagcg tttgacgtcg aagacggtag ttttgataac gattttggtt
4441 atactgtaga cactggcgag aacgttcttt ccgaacgtga aattgaaaag aaaaacagtg
4501 aggtgaaaca
//
