LOCUS MN379636 6553 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg7_1, complete genome.
ACCESSION MN379636
VERSION MN379636.1
KEYWORDS .
SOURCE Chicken microvirus mg7_1
ORGANISM Chicken microvirus mg7_1
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 6553)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6553)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6553
/organism="Chicken microvirus mg7_1"
/mol_type="genomic DNA"
/isolate="mg7_1"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720921"
/country="USA"
/collection_date="2017"
CDS join(4861..6553,1..8)
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82320.1"
/translation="MAIQDYPFVKCTNPSFMVDRLTGKPVLVPCGKCQACLNQRADRY
TLQCRLEAQSVNYVRFVTLTFAQTTVPRLAVHSYSVGYHPQLHHDLVDKETGEVVYQY
VDNPDTMPLSAVLQKQQCFGDFMYLDMSAASLFVKRLRSFLSRLWSSQKRYYNYIEKT
TGHHEFNIFQNGSVPPVRTFIAGEYAPDHWRPHFHILFFFDSDWIAGPADLYHGTVEK
GFSFQRHTLSEFPEWTWSKNPDISPSPDDTLSILEYAVRSCWTFGINETAVPKGDTSS
YVASYVNSSMSLPRIFQANCFRPRCLHSNFLGQRFLKGERTSVYKMSPKAFIRRGYEC
NGEIKQYNLWRSAYSVFYPRIRGYSIKSPQELFDAYTAYYRAVEIYGRGAKTSFIARE
IVDEIIRSLHNPSLCCHDSRFVKLCRYFKSEFYDTFAHDLLKTPVDDPLFQEVYFRWY
VNVYTFLRVSKHFCTFCSDGFDVHSFRVRLNSIIEFYKTLDYWHLTDWYKSQQKYFEK
DFACPEDVVYFYNNVEFNLNEFKSSFLYKKYYQYNFDRFRERIKHKSTTHLNLEFDYG
"
CDS 1..1812
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82319.1"
/translation="MAKNNIMSLVKARNKTSRSGYDLSKRIAFSTKPGELHPIWWRNV
FPGDHWEFDLNSFMRTAPVATASQGRLRYYYDFFFVPMEQLWQFFPTFITQMNDNKQH
SNGLLKSQNPNLDGTLPSFTMGDFSAYTNALNSSSYKTNMFGFSRVALSRRLFNYLTG
PRFNSDGSLIGGSTGLVPHSLLPWAAYQKIYADYFRYTQWETVNPATFNFNFMKGSGD
TELADYTSTITSNDFLRNETIFDMRYCNYQKDLFHGLLPTSQFGEEAAVPLTFSAASK
VDINHPLFQLSKPLGNKTIGATFSPNETNTLSYLGATDSSSANPIVNINGSLIYDSSS
AFGSLPILLLRQYESYQKWKEISLAAEEDYKSQLEAHWGVSVSEYLSGMVRYLGGISG
NVNVNEVVNQTLTDAEANIRGKGLDSANGKITFDFKGEYGILMIIQHSLPLLDYNTSG
YHLESTMIHAEDYPIPELDSIGMEQLPSYYLSTASSVFPNVSLIGYMPRYCQFKTDYD
VVFGAFRSSLKNWVLPYDDSDVIDANNSSMTPDDNPNVGLQGSYLRYQFFKCNPHIVD
DMFASVMDDTPETDPLWFWCYLNIRVTRSLDRNGLPY"
CDS 1854..2342
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82325.1"
/translation="MTNKNIQTLKRAVQIFPKVAANYSSYLNQDYCVVRTSQRMEQYF
FAKRVTSQGEQIIEYHNDIYLMFHADKLDTSTKQALMEKIQAQPPIDPIRHLSDRLSP
EQMCQFVRSRYCQSLSELRAYSAQLQRMTDAELNSYMGSFKPADTGAGDAGDTGSGGS
SE"
CDS 2342..3499
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82321.1"
/translation="MAAAAAISAAGTLASGLGSIGSGIGNGISQKRTNAMNLQINREN
NEFNRQMMEEQMRYNTEMYERSLSDSRETWEQQFNAVNEYNDPSAQLDRLEKAGVNRQ
LAAAGLSGSASTASPTSAAGTSSGATPAQSHGIQLQAPKYDLSGIQGAVAAGVDMYTK
LKNTESTTALTDEQRIGAQLSNQFYIQKVMSEIYKNNASAGYDNARSMTEQAMRPLYV
QKAQTDIVNGLQNYQRLQQVTKSIRIQNAMDSIRLENLPDQIKLDLAQKVAGIAESYS
RQELNKSQAKKAMQDVFESAARAAGIQMKNALFAATVDQQIERIDKENQLLQKQIDSF
LPPREAKLWDIGKGVLDTAGDFLLYKGMGGLFRRAAKSAPPMQGALGFPMN"
CDS 3815..4123
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82322.1"
/translation="MNFVSLSYRKQLNIMIMKRLFKSHFVFNYDKFLSLSRDRAYSVS
YGDIFLGTYYPSRGKFISSLECLCDMNFLRGRQNLLSRICDYYKYDVDFSSYINTMLR
"
CDS 4532..4777
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82323.1"
/translation="MKRFRSHRVGRNLSNKVGMTPLERSDSHADSIHQLLHISDELFI
LRQLFNYYDYENLYLCCCSCWCYIGSILWFILGSLRK"
CDS 4614..4859
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82324.1"
/translation="MPTVYINCCISRMSYLYCGNFLIIMIMKTCIYVVAVVGVTLVAS
CGSSWEVSGNNIVINKADKPVEVPAGTYYILPDSVPK"
ORIGIN
1 atggctaaaa ataacatcat gagccttgtt aaggctcgca ataaaacttc gcgttcaggc
61 tatgatttgt ctaaacgtat tgcgttctca actaagcccg gtgaacttca cccaatttgg
121 tggcgtaacg tttttcccgg tgatcattgg gaatttgatt taaatagttt tatgagaacg
181 gctcccgttg ctactgcatc acaaggtcgt ttacggtatt attatgattt cttttttgtt
241 ccgatggagc aactttggca gttctttccg acttttataa cccaaatgaa cgataacaag
301 cagcattcca acggtctatt aaaatcgcag aatcctaatt tggatggtac tttgccttct
361 tttacgatgg gagacttttc agcatataca aatgcgttaa attcctcttc ttataaaact
421 aacatgtttg gtttttcgcg cgttgctctt tctcgtcgtc tattcaatta tcttactggt
481 cctcgattta attctgatgg ttctcttatc ggcggttcaa ctggtcttgt tcctcattct
541 ttattaccat gggctgcgta tcagaagatt tatgcggatt acttccgcta tactcagtgg
601 gaaacggtca atcctgctac ttttaatttc aatttcatga aaggttctgg agatacggaa
661 ttagctgatt atacctcaac gattaccagc aatgattttt tacggaatga gactatattc
721 gacatgcgtt attgcaacta tcaaaaggat ttgtttcatg gtcttttgcc tacctcgcag
781 tttggagagg aagctgctgt acctttaact ttttctgctg cttctaaagt agatattaat
841 caccctttat tccaactttc taagccttta ggtaataaaa ctattggagc tactttttct
901 cccaatgaaa ctaataccct ttcttatttg ggtgctactg attcttcttc tgctaatcct
961 attgttaata ttaatggctc tttaatttat gattcttctt ctgcgttcgg ttctttacct
1021 atcctccttc ttcgacagta cgaatcatat cagaagtgga aagaaattag tttggctgct
1081 gaagaagatt ataagagcca gttagaggct cattggggtg tatctgtatc tgaatatctt
1141 tcaggtatgg ttcgttatct tggtggtata tctggtaatg taaatgtcaa tgaggttgtt
1201 aatcagacct taacagatgc agaagcaaat atacgtggta aaggtcttga ttctgctaat
1261 ggaaaaataa catttgattt caaaggcgaa tatggtattt tgatgattat tcagcattca
1321 ttgccgttac ttgactataa cacttctgga tatcatttgg aatctactat gatccatgcg
1381 gaagattatc cgattcctga acttgatagt atcggtatgg aacagctgcc ctcttattat
1441 ctttctacgg cttcatctgt ttttccgaat gtatctttga ttggatatat gcctcgctat
1501 tgtcagttca agacagatta tgacgttgtg tttggagctt ttcgctcttc tctcaagaac
1561 tgggtgttgc cttatgatga ttcggatgtt attgatgcta ataattcatc gatgactccg
1621 gacgataatc cgaacgttgg tcttcaaggt tcatatttac gttatcaatt ttttaagtgt
1681 aatcctcata ttgttgatga tatgtttgct tctgtgatgg atgacactcc tgaaactgac
1741 cctctttggt tctggtgtta tctaaatatc cgtgtcactc gtagtcttga tcgtaacggt
1801 ttgccctatt aatttgtcta attgtaattg tttaatcgta aatttttgat aatatgacaa
1861 ataaaaatat acaaactttg aaacgtgctg ttcaaatatt tcctaaagtc gccgcaaatt
1921 attcctctta cttaaatcag gattattgcg tagttcgtac ttctcagcgc atggagcagt
1981 atttctttgc taagcgtgtg acttctcaag gtgagcaaat tatagagtat cataacgaca
2041 tctatcttat gttccatgca gataagttgg atacttcgac taaacaggcg ttaatggaga
2101 aaatacaggc gcaaccgcct atcgacccaa ttcgccatct ctctgatcgt ctgagccctg
2161 aacagatgtg ccaatttgtc agatctcgtt attgtcaatc tctttctgaa cttcgtgcgt
2221 attctgctca gttgcagcgt atgacggatg ctgagttgaa ctcttatatg ggttccttta
2281 aacctgccga tactggtgcc ggtgatgctg gagacactgg ctcaggtggc tcttctgaat
2341 aatggcagct gctgctgcta tttccgctgc tggtactctt gctagtggac ttggttctat
2401 tggttcgggc atcggtaacg gtatttcgca aaagagaacg aacgctatga atctccagat
2461 aaatcgtgaa aataacgagt tcaatcgcca gatgatggaa gaacaaatgc gttataacac
2521 ggaaatgtat gaacgttcgt tatctgattc tcgcgaaaca tgggaacaac agttcaatgc
2581 cgttaatgaa tataatgatc cgtccgctca acttgatcgt ctggaaaaag ctggtgtcaa
2641 tcgccagctg gctgctgctg gtctgtctgg ttctgcatca acggcttctc ctacatctgc
2701 tgccggtaca tcatcaggtg ctacacctgc acagtcccac ggcattcagt tacaggctcc
2761 taaatacgac ctttcaggca ttcaaggcgc tgtcgctgct ggcgttgata tgtacacgaa
2821 actcaagaat acggaatcga ctactgcgct cactgatgag caacgtattg gtgcgcaatt
2881 atctaaccag ttctatattc agaaagtcat gtctgaaata tataagaata acgcttcggc
2941 tggttatgat aacgctcgtt ctatgactga gcaggctatg cgccctcttt atgtgcagaa
3001 agctcaaacg gatatagtta atggtctaca gaattaccaa cgtctgcaac aggttacgaa
3061 atctattcgt attcagaacg caatggattc tattcgtttg gaaaatcttc ctgatcagat
3121 taagttagat ttggctcaga aagtagctgg tattgctgaa agttattctc gtcaggagct
3181 caataagtct caggccaaga aagctatgca ggacgtattt gaatcggctg cccgtgctgc
3241 tggtattcaa atgaaaaatg cattgttcgc ggctactgtt gaccagcaaa tcgaacgtat
3301 cgacaaagaa aatcaattat tacagaaaca gattgattcg ttcttaccac ctcgtgaagc
3361 taagctctgg gacattggca aaggtgtcct tgataccgct ggcgacttct tattgtataa
3421 aggtatgggc ggtctgttcc gccgtgctgc gaagtctgct ccgcctatgc aaggtgcgtt
3481 aggtttccct atgaactgag aactgatgaa atcgtttctc acttttcccg aagggtagcg
3541 cggcttcaat gcccgctatc cttctctctc gtctaacctt gaaaaagtga cacgcctatg
3601 tacgaaatat taggattccc tgttacgttc tattcatgtt ctgatgttat tgattgcctt
3661 tcatcgttaa ccccggagac tcgtcattta tttgaatgtt cttggattgc gtataaaggt
3721 cgtcctttgt ttatgatttt agttgaacct gacggtaaaa gatttggttt aaaacttatt
3781 ccttttcgtt aacacttgtt tgcaagtcgt ttctatgaat ttcgtatctt tgtcatacag
3841 aaaacaatta aatattatga ttatgaaaag gttatttaag tctcattttg tatttaacta
3901 cgataaattt ttatcgttgt caagagatcg tgcgtattct gtatcttatg gtgatatctt
3961 tcttggtacg tattatcctt ctcgtggtaa attcattagt tccttggagt gtctatgtga
4021 tatgaatttc ctaagaggac gtcagaactt gttatctcgt atatgtgatt actataagta
4081 tgatgtagat ttttcttcgt atattaatac aatgcttcgt tgatatgaaa aaacaacatt
4141 attatttcat ggctacattt atcagcctct atcagactaa ggcagagatt tctctgcctt
4201 tgaatattgt cacttggcct gctgctattc gttggctatc tactcgtatt ccggaaaaat
4261 atgctcttta ttctgttcgc aaagaattgc tccgacctga aaatctatgc gacaaccatg
4321 agacccaaaa agaagaaaaa aacttagcgg aatgagcttt ttttttatgc gcttaacctt
4381 tcgacccgca cggtcttttt gagattcggc tgatatagca atggtaaaaa gtgttaaaaa
4441 cgaagttttt aattcgcttt ttggcattac tgtatcagac taatctctga cctttgtgcc
4501 ggtcgagaga ttaagtgcta acaatttgcg aatgaagcgc tttcggtccc acagagtggg
4561 ccgaaatcta tcgaataaag tcggcatgac accattggag cgtagcgaca gtcatgccga
4621 cagtatacat caactgttgc atatctcgga tgagttattt atattgcggc aactttttaa
4681 ttattatgat tatgaaaact tgtatctatg ttgttgcagt tgttggtgtt acattggtag
4741 catcttgtgg ttcatcttgg gaagtctcag gaaataacat tgtaattaac aaggcagata
4801 aacccgtaga agttcctgcc ggaacttatt atattctgcc tgattcagta ccaaaataat
4861 atggctattc aggattatcc ttttgtaaag tgtaccaatc cctctttcat ggttgaccgt
4921 ttgaccggca agcctgtcct tgttccttgt ggcaagtgtc aggcttgttt aaatcaacga
4981 gctgaccgct atacgttgca atgtcgcttg gaagcccaga gtgtaaatta tgttcgtttt
5041 gtcacgttaa catttgctca aacgactgtt ccgcgtttgg ctgttcactc ttattctgtc
5101 ggttatcatc ctcagttaca tcatgattta gttgataaag aaaccggtga agttgtatat
5161 caatacgttg ataatcctga tacaatgccg ttgtctgctg ttctccagaa acaacagtgc
5221 tttggcgatt ttatgtacct tgacatgtct gctgcctctc tctttgtcaa gcgtttacgt
5281 tcatttttat cgcgcttgtg gagctcccaa aagcgttatt ataactatat agaaaaaaca
5341 actggtcatc atgaatttaa cattttccaa aacgggtctg ttccccccgt acgtacgttt
5401 attgccggtg agtacgcgcc cgaccactgg cgcccacatt tccatattct ctttttcttc
5461 gattccgact ggattgccgg acccgcggac ttgtaccacg gaacagttga aaaaggattt
5521 tcctttcagc ggcatactct ctcggaattt cccgaatgga cttggtcaaa aaaccctgat
5581 atatcgccct cgccagacga caccttatca atcctcgaat atgctgtacg ttcgtgctgg
5641 acgtttggta ttaacgagac ggcagtcccg aaaggagaca cttcatcgta cgttgcgtct
5701 tacgttaaca gctctatgtc tttaccccga atttttcagg caaactgctt cagaccccgt
5761 tgcctgcact cgaatttctt gggtcaaaga tttcttaaag gcgaacgcac atcggtatat
5821 aaaatgtccc ctaaggcatt tatacgacga ggctatgaat gtaatggaga aattaagcag
5881 tataacctat ggcggtcggc ttactctgtc ttttatcccc gaattagagg ttattctatt
5941 aagtctccac aagaactatt tgacgcttat acagcctact atcgagcagt tgaaatctat
6001 ggaagaggag caaaaacctc ctttattgcc agagaaatag ttgatgaaat tatacgttct
6061 ttacataatc cctctttgtg ttgtcatgat tcaagatttg ttaaactttg ccgatacttt
6121 aaatcggaat tttatgatac gttcgcccac gatttattga aaactccagt ggatgatcct
6181 ctttttcaag aggtatattt tcgttggtac gtgaatgtat atactttttt acgagtatct
6241 aaacattttt gtacgttctg ttcggatggt tttgatgtac attcttttcg tgtacgtcta
6301 aattctatca ttgaatttta caaaactctc gactactggc atctgacaga ttggtataaa
6361 tctcaacaga agtattttga aaaagatttt gcctgtccgg aggatgtagt atatttctat
6421 aataacgttg aatttaactt aaatgagttc aagtcttcct ttttgtacaa aaagtattat
6481 cagtataatt ttgaccgttt tcgagaacgt atcaaacaca agtctacgac tcatttaaat
6541 ttggaatttg att
//
