LOCUS MN379637 6385 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg7_6, complete genome.
ACCESSION MN379637
VERSION MN379637.1
KEYWORDS .
SOURCE Chicken microvirus mg7_6
ORGANISM Chicken microvirus mg7_6
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 6385)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6385)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6385
/organism="Chicken microvirus mg7_6"
/mol_type="genomic DNA"
/isolate="mg7_6"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720928"
/country="USA"
/collection_date="2017"
CDS 1..2274
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82330.1"
/translation="MANVFDKIGDIRNDVKRNNFDWSHDNNFTTGLGRIIPVFCTQVP
AGSSLRINPTFGLQFMPMMFPVQTKVKAYLSAYRMPLRALWKDYKDWVSSANDQTSQL
EPPYMEFLPEFGKGEILGVSGLSDYIGLPVTMIAEEAVPAPSLVSANPDENRRYVGNT
VPVYGGTYGVNTTPNTPYSSCASALFNGDYADIYVVRRGFATVSEDTDDSVKTVGMRC
TFSFTATGAQASFLLNQLASLETSQVMDKVLGWFAFVDSNSKVRGVASFTGRDVKTSG
DESALFVTISSTCTVDAVKPVPSLELNVHVAIANATCFINSDGSKWLYDDKTFNFAGF
AQFPISANSCPYYMHGGDNNNALKISAYPYRTYEAIYNAYIRNTKNNPFLINGKPTYN
KWIVNDDGGADNAEYVMHYANWASDMFTTAVPSPQQGQAPLVGITTYAESRTLENGHV
ETTINTALVDEDGNKYKINYESNGEELKNVSYTKLSSDTAVKPLSSLYDLVTSGISIN
DFRNVNAYQRYLELNMFRGYSYKEIVEGRFDVSIRYDDLNMPEYLGGCTRDVVINPVT
QTVQTNSAGTYDGALGSQAGLGLLRGDCENISCYCDEESIVMVLLSVVPMPIYSQALP
KYLLYRERLDSFNPEFDHIGFQPIRMSEIAPIQQWIKDDTKMNDVFGYQRPWYEYCQQ
LDTAHGLFKTDLRNFLINRVFGDVPVLGSEFTTVDESEVNDVFAVTDVSDKILGQIHF
DITAKLPISRVVVPKLE"
CDS 2277..2585
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82327.1"
/translation="MALLVRGRSMFSPKVTKCSLKPHEKPVQNGLAITPSDIERLAQQ
GVAVSVPNADSFLYNNEVGFDIDPVYSRDEDRNSLWERSQIAKSRIMKARKRDAEKFT
"
CDS 2636..3751
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82326.1"
/translation="MALLSGIFGAIGAGLGALNNLSARKREKRAQQWEAQQNEINRNW
QEKMYKLQIANQRQDAAIARAWNSPVAQMQRLQAAGLNPDMMYGNGATQPAAVTPSYS
QPSGAGATAGAVSAIGATPTIGDSMLRGIEAMRTLAETSNIQEDTNKKRGEITSLDMD
NFVKAATQGKQIELVDMQVTLAKKASDLSDAQRSNLLQTLNNLQSQNEYVNQQIQQSI
AQTRNLDSQTLNNRISAYLSGPRFDMEVKQFQQQLRESDARIVVNNAQAKEILTLVLS
KKLNLDTDTLLKKANVRKTNFDAANAIRNGNILNIQSKQLQFNYEQSTSYDDVERISN
IVSGALGSVGQIANDILMFKGIGTFQEGAKAVSRRKR"
CDS 3981..4238
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82328.1"
/translation="MKAYYYKIHYAYRLNELDYESRTFESKRFFFRQNCEDELQLVLP
RYIRLFKKGVPYSEIFEEETPKEMTNEDFLKYFCDVKFSNI"
CDS 4244..4498
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82329.1"
/translation="MTTIYKYYIRYYNITKNNKKYYLKIESPAYAFENICSESMQNTI
RNIVSNPKYTIDSYWIESILVDSISDISILTLPDLSDLPF"
CDS 4641..6161
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82331.1"
/translation="MNKKKNIYCEHPVILLNPRFQKMAREYGSICIRNIRVWVRLNDI
LPDSRLFLAKRNKISLSEVDTCYFRNDVTGEVAPLYMVVPCGRCTLCRAKKSRELMFR
CVAETNRWNKVPFFITFTYNDKYLPADGVQKRDLQTFFKRLRSRLDYYGIEHNLRYFA
VAEYGSKTHRAHYHVILWNFPDATFPSVMAIQHFIEKAWSTFVYEEKDGKKRRVPLLD
KAGKVMTYPSGVIRYKIEQLGFIRVLPVKQGCPAYVTKYMRKPCYVPKGCNPVFALAS
NRGGGIGSQYFKDNAEFIRNNPTLQKLEIVDKVVSGRTFTCPITQYVKNIVMPTASQK
LPKKDYDIVKKFYCTLDLFQYLEIRFRQYDMLNLDVYDYKKECVKHWYDPFTDWRSRA
DWCEAVRLTSCFIHPVLKVDHENLFNELPHKDMESYREYLWNLMSDTIDCLNNYSRRI
LDMSDLTTYFANRDRYSSTRQAFFENMFRNAEPVNVELAVERIINNEIKNQHKDVF"
ORIGIN
1 atggcaaatg tttttgataa aatcggtgac attcgtaacg atgtaaaacg taataacttc
61 gactggtcac acgataacaa tttcactacg ggattaggtc gtatcattcc cgtattttgt
121 acgcaagttc ctgccggttc ttccttacgg attaacccta catttggctt acaattcatg
181 cctatgatgt tcccggtaca gactaaagtt aaggcttatc tctccgctta tcgtatgccg
241 ttacgtgcgt tgtggaaaga ttataaagat tgggtttcat ctgcaaatga tcaaacttca
301 caactcgagc cgccttatat ggagtttcta cctgaatttg gtaaagggga aattctcggt
361 gtttcaggtc tttctgatta catcggattg cccgttacta tgattgctga ggaggctgtt
421 cctgctccgt ctttggttag tgcaaaccct gacgaaaacc gaaggtatgt gggtaatact
481 gtgcctgttt atggtggtac ttatggagtt aatacgactc ctaatactcc ttattcttcg
541 tgtgcaagtg ctctttttaa tggagactat gctgatattt atgtagtccg tcgtggtttt
601 gctaccgttt ctgaggatac ggatgattct gttaaaaccg tgggtatgcg ttgtactttc
661 tcttttactg caactggtgc tcaggcttct tttttgttga atcaattggc aagtcttgaa
721 accagccaag tcatggataa agtgttaggt tggtttgctt ttgtcgatag taatagcaaa
781 gtgcggggcg ttgcatcctt tacgggtcgt gatgttaaga cttcaggtga tgaatcggct
841 ttgtttgtta ctatatcctc tacgtgtacc gtggatgctg taaagccggt accttcatta
901 gagcttaatg tgcatgttgc tattgccaac gctacgtgct tcattaattc ggatggctct
961 aagtggttat atgatgacaa aacatttaat tttgccggct ttgctcaatt cccgataagt
1021 gcaaatagtt gtccgtatta tatgcatggt ggggataata acaacgcatt gaagatttcc
1081 gcgtaccctt atcgtactta tgaggctatc tataacgctt atattcgaaa tactaagaat
1141 aatccgttcc tgattaacgg taagccgact tacaataagt ggattgtaaa tgatgatggc
1201 ggagctgata atgctgaata cgttatgcat tatgctaact gggcttccga tatgtttact
1261 acggctgttc cgtctcccca gcaaggacaa gcaccgctcg ttggtattac tacgtacgct
1321 gaaagtcgta ctttagaaaa tggtcatgta gaaactacta ttaatactgc gttagttgac
1381 gaagatggaa ataagtataa gataaactat gaaagtaacg gtgaagaact caaaaacgta
1441 tcatatacga agttgtcctc tgatactgcc gtaaaaccgt tatcttcgtt gtacgattta
1501 gttacatcag gtatttctat caacgacttc cgtaacgtta acgcttacca acgttatctc
1561 gaacttaata tgttccgtgg ttattcatac aaggaaatag tcgaaggtcg ttttgacgtg
1621 tcgattcgtt acgatgactt aaatatgcct gaatatcttg gaggttgtac tcgtgacgtt
1681 gtaatcaatc ctgttactca gacagtacag acaaatagcg ctggtacgta tgacggtgcg
1741 ttaggttctc aggctggtct cggcttactt cgtggtgatt gtgaaaatat tagctgttat
1801 tgtgatgagg aatcaatcgt gatggtgttg ttgtccgtag ttcctatgcc tatctactct
1861 caggctttgc ctaaatatct gttgtatcgc gaacgtttgg atagcttcaa tcctgaattt
1921 gaccacatcg gattccagcc tattaggatg tctgagattg ctcctattca gcaatggata
1981 aaagatgata caaaaatgaa tgacgtcttt ggttatcaac ggccttggta tgagtattgt
2041 cagcagttag acaccgctca cggtttattt aagacagact taagaaattt cttaatcaat
2101 cgtgtttttg gtgatgtccc cgtattaggt agcgagttta caactgtgga tgaatcggaa
2161 gttaacgatg tatttgcggt aactgatgta tctgataaga ttcttggaca aatccatttc
2221 gatattacgg ctaagttgcc gatttcacgt gttgttgtac ctaaattaga ataattatgg
2281 ctcttttagt tcgtgggcgt tctatgttta gcccaaaagt cacaaagtgt tcgttgaaac
2341 ctcacgaaaa acccgtacaa aatggattgg caatcactcc gtctgatatt gaacgattgg
2401 ctcagcaagg cgttgcggtt agtgttccaa atgcggattc gtttctctat aataatgagg
2461 ttggttttga cattgatcct gtctattctc gggatgagga tagaaactct ctatgggagc
2521 gttctcagat tgctaagtcc cgtatcatga aagctcgaaa acgtgatgcg gaaaaattca
2581 cctaatgttt aaccgcccta cttgcttcgg tgagtagggc taaattcgtt ttattatggc
2641 tctattatct ggtattttcg gtgcaatcgg agcaggtctc ggtgcactta ataatctttc
2701 cgctcgtaaa cgtgaaaaac gtgcgcagca atgggaagca caacagaatg aaatcaatcg
2761 taattggcaa gagaagatgt ataaactgca aattgccaat caaaggcaag acgctgctat
2821 tgcccgcgct tggaattctc ccgtggcgca aatgcaacgt ttacaggctg ccggacttaa
2881 tccggatatg atgtatggta atggtgctac tcaaccggct gccgttactc cgtcttattc
2941 tcaaccgtcc ggagctggtg cgaccgctgg tgctgtttcc gctattggtg ctacgccaac
3001 aattggtgat tctatgcttc gtgggattga ggctatgcgt acgctcgcag aaacatctaa
3061 tattcaagaa gataccaata aaaaacgtgg tgaaattact tctttggata tggataactt
3121 cgttaaagct gctacgcaag gtaagcaaat agagttagtc gatatgcaag ttacgttagc
3181 taaaaaggct tctgaccttt ccgatgctca acgttctaat ttgcttcaaa ctctgaataa
3241 tttgcagtct cagaatgaat acgtaaatca acagattcag caatctattg cacaaactcg
3301 taatttagat tcgcaaacgt tgaataaccg tatttctgca tatctctcag gacctcggtt
3361 tgatatggag gtaaaacaat tccaacagca acttcgtgag agtgacgcaa gaatcgtagt
3421 taacaatgca caggcgaaag aaatcctaac tctcgtatta tctaagaaat taaacttaga
3481 tacggatact ttgttgaaga aagcgaatgt tcgtaaaact aatttcgatg ctgcaaatgc
3541 tatccgaaat ggtaatattc tgaacattca atcaaaacaa ctacaattca attacgaaca
3601 aagtacttct tatgatgatg tcgaaagaat tagtaatatt gttagtggtg ctctcggttc
3661 tgtcggtcaa attgctaatg atattcttat gtttaagggc attggcacgt ttcaagaagg
3721 tgctaaggca gtttcaagaa gaaaaagatg atagaggacg ggagacatag tctcccggct
3781 tatcccctac ttgataatat tagcacaact gacaggtacc gaaattgtat atgaggattg
3841 tgcaatgatt ccttagagaa aatcgatttt caaccccttt tgtacagaaa accctacctt
3901 ttgtacaata ttctgaaaaa ctcttgacat tagattagat tctgcttata tttgtggcgt
3961 aatcaaaatt taaatgcgtt atgaaagctt attattacaa aatccattat gcgtaccgac
4021 tgaatgagtt ggactatgaa agtcgtacat ttgagagcaa gcggttcttt ttccgacaga
4081 attgtgaaga tgagttacaa ctcgtattac ctcgctacat tcgtcttttt aaaaagggtg
4141 ttccgtattc cgagatattt gaagaagaaa cgcctaaaga gatgactaac gaagatttct
4201 taaaatattt ctgtgatgtt aaattctcta acatttaagt attatgacta cgatatataa
4261 gtattatata cgatattata atattacgaa gaataacaaa aagtactatc ttaaaataga
4321 aagtccggct tatgcgtttg aaaacatttg ttccgaaagt atgcagaata ccattcgtaa
4381 tattgttagt aatccaaaat atacgattga ttcgtattgg atagaatcta ttttggtcga
4441 tagtatcagc gacatttcca ttttgacttt gcccgaccta tccgacttgc ccttttgaag
4501 tcactttctc gccctaaatt atgaaaaacc acgtcccccc ctatgcaggg gggcggaggg
4561 gggtgagaaa tagacttctt cacccgtgaa gccgcgatgc gtgcgagctc ctattgcttt
4621 acatcttaat tggtaacatt atgaataaga aaaaaaatat atattgtgaa catcccgtta
4681 ttctccttaa cccacgattt caaaaaatgg ctcgtgaata tggttctatc tgcatccgca
4741 atatccgtgt atgggttcgc cttaatgata tacttcccga tagccgtctt tttcttgcca
4801 agcgtaataa aatcagtctt agcgaagtcg atacgtgcta tttccgtaat gatgtcacag
4861 gcgaagtagc ccctttgtat atggttgttc cctgcggacg ctgcactctc tgtcgtgcta
4921 aaaagtcccg tgaactaatg ttccgttgcg tggctgaaac taatcgctgg aataaagtcc
4981 cgttctttat tacattcacc tacaatgata agtatctccc tgctgatggt gtgcaaaaac
5041 gtgacttgca aacattcttt aagcgtctcc gttcccgttt ggattactac gggatagaac
5101 ataatttgcg ttattttgct gtcgctgagt acggaagtaa aacacatcgt gcccattatc
5161 atgtaatatt gtggaatttc cccgatgcta catttccgtc tgtcatggct attcaacact
5221 tcattgaaaa agcatggtct acgtttgtgt atgaggaaaa agatggtaaa aaacgccgtg
5281 ttcctctttt ggataaagct ggtaaagtta tgacttatcc gtcaggtgtt atccgttata
5341 aaattgaaca actcgggttt attcgtgtac ttcctgtgaa acaaggttgt ccagcgtatg
5401 ttactaaata catgcgtaaa ccctgttatg ttccgaaagg ttgtaatcct gtgtttgctc
5461 ttgcgtcaaa ccgtggcggt ggaataggtt ctcagtactt caaggataat gcggagttta
5521 tccgtaataa tccgactttg cagaaactcg aaattgtcga taaagttgta tcaggtcgta
5581 cttttacatg ccctattaca caatacgtaa aaaatatagt aatgcctacc gcatcgcaaa
5641 aacttcctaa aaaggattac gatatagtta aaaaattcta ttgtactttg gacttattcc
5701 aatacttaga aatcagattc cgtcagtatg atatgcttaa tttggacgtc tacgattata
5761 aaaaagagtg tgtaaaacat tggtatgacc catttactga ttggcgttct cgtgcagatt
5821 ggtgtgaggc tgtgagactt acgtcctgtt ttattcatcc tgttctgaaa gtagaccatg
5881 aaaatttgtt taacgaactt ccgcataaag atatggaatc gtatcgtgaa tatctatgga
5941 atctgatgtc tgatacgatt gactgcctta acaattattc acgtaggata ttggatatgt
6001 cagatttaac tacttacttt gcgaatagag acagatattc atctactcgg caagcgttct
6061 ttgaaaatat gtttagaaat gcagagcccg ttaatgtaga attggctgtt gaacgtatta
6121 ttaataacga aataaaaaat cagcataaag atgtattctg aaatttttaa agctatcttg
6181 gaactcttca ccaaaggtaa aaaagttcct gctattattg catttgttct gttatgtgcc
6241 cttattgcct tactgacgtt cggttgtact aactctctgt acgtgaacaa aggtagtggc
6301 aatactatct cacccgaaac aaccctctcg gctgattcgg caaacgtaaa tactgatatt
6361 gaaattcctt taaaccgtta aaatt
//
