LOCUS MN379638 6308 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg7_7, complete genome.
ACCESSION MN379638
VERSION MN379638.1
KEYWORDS .
SOURCE Chicken microvirus mg7_7
ORGANISM Chicken microvirus mg7_7
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 6308)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6308)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6308
/organism="Chicken microvirus mg7_7"
/mol_type="genomic DNA"
/isolate="mg7_7"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720929"
/country="USA"
/collection_date="2017"
CDS 1..1863
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82335.1"
/translation="MANIMSLKNVRNKASRNGFDLSRRTCFTSKVGELLPVWWQYVLP
GDSFNIDLSSFTRTQPVNTASFGRIMEYYDFFFVPLSQLWNRTPTVMTQMLDNNQHST
GLQSNAKLDGDLPHLGSIVQFNQYCNAVDSSQYPQNMFGLNRAQLSTKLMSYLGYGQP
AGSEKGLVQTASQGGNVCLFPLLAYQKIYADFFRFTQWESPNPSTFNVDWMTGNGDCN
VSSAQFTDFSQSNMFDLRYCNYQKDLFHGIMPNAQFGDTAAVPLSGGSGSPFQKTYEN
VVNVDQIVHNEVGLRVHNSSTDPVVQSNTSLESGRSIPTFNPNATFSLITNERLVGSS
EVQVLKDISFSGGALSGLSILALRQAEALQRWKEVAQAAEEDYKQQIQAHWGVNVSDY
LSGMCRYLGGNSNNVQINEVVNTNLVAGDASQPADLAGKGIGSQRGNITFNSNGEYGV
IMCIYHALPLLDYVTTGTDAKLFHVQGSSFPIPEMDNIGMELLPFGALTNGVSVVTPG
NAWMGYVPRYIDWKTDYDRCVGGFFGSLQSWILPYSDLSLRLTGSSFASPDDNPNVGD
INACSYPFFKVRPSIVDPMFAVDADSTVGTDHLLNQCFIKCYVTRNLDVNGLPY"
CDS 1875..2351
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82334.1"
/translation="MFKGRKTDKTATPCVQGVAELDARYSKVREHVPYEPLLVNEYPD
GSFRVLSDVDLLFNQQRLDRMSLAALKQKLDDSVQAGDNGLSAIRKNIKDEDLQKFIK
SRYIQSLSELRQWSSYLSSEYARVVDSIRASQKPVVAPTSPTGAAPAAPAGNGSAE"
CDS 2405..3367
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82332.1"
/translation="MSTSRKNTKDTNQTNLEIAQMGNEYNMAMLDKQIQEQWKMWQAE
NEYNSASAQRQRLEAAGLNPYMMMDGGDAGRASSMTAPAAQGAIVPTMQVPPQSGLQE
FLAAIDGITQLAGGITNTLFTGTQIAGANVDNVVKKQTALADIQQRRALSQISQITAG
NERTRQNLNIAGQSISNEAAYQSLLGHAVDNLRAYTELQALPQQLQYSLAHLAADLKQ
KYLNHDLTRKQIEKEIQSISSLKLENQYAGETMDARVRTAEAQAASAEANQGANNMYQ
LAQDFLRHFVLDKTNSKPLMEQIRDAAGAAIRGDSIYNNPNISY"
CDS 3367..3660
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82333.1"
/translation="MCYYIDGMDVPFRSFGEIKEFLLSLTEPFMLYQFIDRHVYYGDC
VSNVFMHCSVLEVGHSVIAGKFHYEVSVLASCDRCSYISFVPAFMNRSFIRVS"
CDS 4729..6291
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82336.1"
/translation="MNATGTPFTCLHPSYVVNPYTHQKVAAYCGKCAACVARKARRYE
TQIQLEAQNSAAVLFVTLTYANSYVPKLELVPVAGSSLGAFSMYDAIESDTGEMFGTL
TLKQSDVKRLQDKVYLFGKIPYLDKKAIQKFMKRLRKSLSEYNNEKIRYFLCGEYGPE
HFRPHFHLLLFLKSRVFLAPTRKTLAKDFPAWTWEHSENAVPDAPLSVLECAVREAWR
FGSIDAVVPKGDCAQYVASYVNGLGNLPAVLRLGKTKPFTAHSRFLGFEFCKAEREKV
YASTPEQIVHRSLSLPGFYKEFDCPVSYTNVFFPKCKGYALKTHRERLFTYRLYLAAK
TEFPDLPLMTVAMDLVNLTMFYCSDAEGDAFPPAFPPLTALLCKYFKKSLQLKDRPFT
EYTYEEKDSAIASVYRELCMSRHFLTFCCNGDYTQRATELYLRKIEDFYNYLERMKLA
RWYEEQQVYFDKDYALDEDMIFFYDNVNIDPEEIKNSIAYQKYEIQCSDKARKLIKHK
LQNDLNGIFNNV"
ORIGIN
1 atggctaata ttatgtcgtt gaaaaatgta cgtaacaagg cgtcccgtaa tggctttgac
61 ttgtcgcgtc gtacctgctt cacaagtaag gtaggtgaac tgcttcccgt atggtggcaa
121 tatgtactgc caggcgattc gtttaatatc gacctttcca gttttactcg tactcaaccc
181 gtgaataccg cctctttcgg tcgtatcatg gaatattacg atttcttctt tgtgccgtta
241 tcgcaattat ggaatcgaac gcctacggtc atgactcaaa tgctggataa taaccagcac
301 tctactggat tgcaaagtaa tgcaaaactc gatggtgatt tgccccatct tggttccatt
361 gttcagttta atcagtattg taacgctgtg gattcttcac agtatcctca gaatatgttt
421 ggtctgaacc gtgcgcagct ttctacgaaa ttgatgtctt accttggtta cggtcagccg
481 gctggttctg agaaaggtct tgtccagact gcttctcaag gtggtaatgt ctgtttgttc
541 cctcttctcg cttaccagaa gatttatgct gatttcttca ggtttaccca atgggaatcc
601 ccgaatccgt ctacctttaa tgttgactgg atgacaggta acggtgattg taatgtttct
661 tctgctcagt ttaccgattt ttctcagtca aatatgtttg atttgcgtta ctgtaactat
721 cagaaggatt tgtttcatgg aatcatgccc aatgctcaat ttggtgatac ggctgcggtt
781 cctctttctg gtggtagtgg ttctcctttt caaaagactt atgaaaacgt tgttaatgtt
841 gatcagattg tacataatga agtcgggctt cgggttcata attcaagtac tgatcctgta
901 gtacaatcta atacgtcgtt ggaaagtggt agatcgattc ctacttttaa cccgaatgct
961 acttttagtc ttattactaa tgaaagattg gttggttctt ctgaggttca agtattaaaa
1021 gacatttctt tttctggtgg tgctttaagt ggtctttcta ttcttgcact tcgccaagct
1081 gaagccctcc agcgttggaa agaagttgct caggctgctg aagaagatta taagcaacag
1141 atacaagccc actggggtgt taatgtttct gattatctct ctggtatgtg ccgttatctt
1201 ggcggcaact cgaataatgt ccagataaat gaggtcgtga atacgaacct tgttgctggt
1261 gatgctagtc agcctgctga ccttgctgga aaaggtattg gttctcagcg tggaaatatt
1321 acgttcaatt ctaatggcga atatggtgtg attatgtgta tttatcacgc tttgcctttg
1381 ttggattacg ttactactgg tacggatgca aagttgttcc atgtccaagg ttcttcgttc
1441 ccgattccgg aaatggataa tattggtatg gagttgttgc cttttggtgc tctgacgaat
1501 ggtgtttcag ttgtgacccc tggtaatgct tggatgggtt acgttccgcg ttatattgat
1561 tggaaaactg actatgaccg ttgtgtaggt ggttttttcg gttctcttca aagctggatt
1621 cttccctatt cggatttgtc tttgcgtctg accggttcct ccttcgcttc tcctgacgat
1681 aatccgaatg tcggtgatat caatgcttgt tcgtatcctt tctttaaggt tcgtccctct
1741 attgttgacc cgatgttcgc tgtggacgcc gatagcacag taggaactga ccatttgttg
1801 aatcagtgtt ttatcaaatg ttatgtgact agaaatctcg atgtaaacgg tttaccctat
1861 taaattgatt gattatgttt aaaggtagaa aaacagataa gactgctacg ccatgtgtac
1921 aaggtgtagc tgaattggat gcacgttatt cgaaagtgcg tgaacatgtt ccttatgaac
1981 ctcttttggt taatgagtat cccgatggtt ctttccgtgt cctctctgat gttgatttgt
2041 tgtttaacca gcaacgcttg gatagaatga gccttgctgc gctcaaacag aagttggatg
2101 attcggtaca ggctggtgat aatggtttgt ctgctatccg gaagaatatt aaggatgagg
2161 atttgcagaa gttcatcaaa tctcgttata ttcagtcctt gtcagagctc cgtcagtggt
2221 cgtcgtattt atcttctgag tatgccaggg tagttgatag catccgcgct tctcagaagc
2281 cggttgtggc tcccacttca ccgactggtg ccgctcctgc tgctcctgcc ggtaacggtt
2341 ctgctgagtg attctttttc gtttcattgg gcacgtgaaa gcgtgccctt taaattaatt
2401 gcctatgtct acaagtagaa aaaacacaaa ggacacaaat cagacaaatc ttgagatagc
2461 acagatgggt aatgagtata atatggctat gttggataaa cagatccaag aacagtggaa
2521 gatgtggcag gcagagaatg agtacaatag tgcttctgct cagcgccagc gtctggaagc
2581 tgccggactg aatccttata tgatgatgga tggtggcgac gctggtcgtg cttcttccat
2641 gactgctccg gctgctcaag gtgctatcgt ccctacgatg caagttcccc ctcagtccgg
2701 tttgcaggaa tttcttgctg ctattgatgg cattacgcag cttgccggtg gtattacgaa
2761 tactcttttt acaggtactc agattgccgg tgcgaatgtc gataatgttg taaagaagca
2821 gactgcactt gctgatatcc agcaacgtcg tgctttgtct cagattagtc agattactgc
2881 cggtaatgaa cgtactcggc agaacctcaa tatagctggt cagtcaatca gtaatgaagc
2941 tgcgtatcag tctcttcttg gtcatgcggt tgacaatttg cgtgcgtata ctgaattaca
3001 ggctttaccg cagcaattac agtatagtct tgctcatctt gctgctgatc tgaaacagaa
3061 atatctgaat catgatttga ctcgtaaaca gattgagaag gaaattcagt caatcagtag
3121 tcttaagctt gagaatcagt atgctggtga aacgatggat gctcgtgtac gtactgccga
3181 agcgcaggct gcttctgctg aagcgaatca gggtgctaat aatatgtacc agttggcaca
3241 ggatttcctt cgtcatttcg tgctcgataa aacgaattca aaacctttga tggaacagat
3301 tagagacgct gccggtgctg ctatacgtgg tgattcgata tacaacaatc caaatatctc
3361 ttactgatgt gttactacat cgatggaatg gatgtgcctt ttaggtcttt tggcgaaatc
3421 aaggaatttc ttttgtcttt gactgagcct tttatgctgt atcaattcat cgataggcac
3481 gtgtactatg gtgattgtgt gtctaatgtt tttatgcatt gttctgtatt ggaagttggt
3541 catagcgtga ttgctggtaa atttcattat gaggtttcag tgctggcatc ttgtgaccgt
3601 tgttcttata tttcttttgt tcctgctttc atgaatcgta gtttcatacg tgtttcttga
3661 ttgcctgaaa gaatcgccgc gaagcggcga aaaaattttt aggaaagcgg cttgtttgcc
3721 gctctccttt tgtttctttt aagtatgtta taaattgtaa gttagacata tttatctgtt
3781 agtgttttct ccatacaggt tgcgtttgta gatgtagtat accagttctc cgttaattag
3841 gtagtagttt tttcggtacc ctctttcatc tgtctcttgc ttcttgtata agcattcttg
3901 tccgttttcc gttgcgttga ttactctttc tttccattct ttgaaactga ttcttttcgc
3961 tttcataatt gtaagtttta gttgttaaac atatttcctg ccaaaaaaaa atttttttct
4021 tttcttccac attgccccca acatggtctg tccgtaagga gtgcaaggct ggatgaggta
4081 ataaatggta aaataattgg taaaatttgt tggcgagcgt agcgagttga caaattttgg
4141 ctcttgtttt ggcgtttatt ggcttatcca ttcatatagc cttgcgccct tacggactgg
4201 ccataccttt gcaacgtgga tgaatagaaa aaatccgtcc gcatggaaca tcaacttaac
4261 attttatgaa atccagtcat tttcacgaac gtgctggcgg ttaatctttc cgccagtccc
4321 cttttctcga cctttatagg aaaaatgaca ccagttgtta aaagtgcgtc aggattaatt
4381 aaaatgccaa atatgcgtta aatattcccg tgattataga ttttattaaa ataaagcttt
4441 attattgcgc tgttctctca taatcactgt taatcccttt gttgggtctc tgtaaatatt
4501 aagttaaatt gttaatttta atgcctgtta attacgctta tgaaaaagtt gttctatgtt
4561 gttttggttt tcgctgctgt tgtggctgtt cttccgctgg tttcttgcgg ttcctcttgg
4621 aatgtcgaag gaaacaatat cgttgtgact gttgttgacc gtgatacgat tgtttcccgt
4681 ggtactattt tacttacacc tgattcgtta cgttaatagg tattggttat gaatgctacc
4741 ggaacccctt tcacttgcct gcatccgagc tatgttgtga acccttacac gcatcagaag
4801 gtagccgcgt attgcggcaa atgtgctgcc tgcgttgctc gtaaggctcg tcgctatgag
4861 acacagatac agctggaagc tcagaattct gctgctgtgc ttttcgttac gctgacgtat
4921 gccaattcgt atgtacccaa gttggaactg gttccggtag ctggttcttc tttaggtgct
4981 ttttctatgt atgatgcaat cgaatcagac actggtgaaa tgtttggcac gcttactctt
5041 aagcagtctg atgtaaagcg tcttcaagat aaggtgtatc tctttggaaa aattccttat
5101 ctggacaaaa aagcgattca gaaatttatg aaacgattaa gaaaatcatt aagtgaatat
5161 aacaatgaaa aaattaggta ctttctttgc ggtgaatacg gaccagaaca tttccgcccg
5221 catttccatc tcttactatt cctcaaatca agggttttcc tcgccccgac gcgcaaaacg
5281 ttggcaaaag actttcctgc gtggacttgg gaacactcag aaaatgccgt tccagatgcg
5341 ccgctttctg tcctcgaatg cgctgtacgt gaagcttggc gattcggtag tatcgatgcc
5401 gttgtgccca aaggagactg tgcacagtat gttgcgtcgt atgttaacgg tcttggcaat
5461 cttcccgcgg ttcttcgtct cggcaaaacc aaaccgttca cggctcattc aaggtttctt
5521 ggtttcgaat tttgtaaagc agaacgtgaa aaagtgtatg cgtctacccc tgaacagatt
5581 gtgcatcgaa gcttgtcgct ccctggcttt tataaggagt ttgactgtcc cgtttcgtat
5641 acaaatgtct tctttcccaa atgcaaaggt tatgctctta agactcacag agagcgtctg
5701 ttcacttatc gcttatacct cgcagctaaa acagagttcc ccgacttgcc gttaatgacg
5761 gttgctatgg acttggttaa ccttaccatg ttctattgtt ccgacgcgga aggtgatgcc
5821 tttccccctg cgtttccgcc tctgactgcg ttgctttgta agtatttcaa aaagtcactc
5881 cagttgaaag accgtccgtt tacagagtac acttatgagg aaaaggatag tgcaatagct
5941 tccgtttacc gtgaactgtg tatgtcacgg catttcctta ctttctgctg caacggtgac
6001 tacactcaac gtgctacgga actgtatctt aggaaaattg aggatttcta caattaccta
6061 gagcgtatga agctggctag atggtatgag gaacagcaag tatactttga taaggattat
6121 gccttggatg aggatatgat attcttctat gataatgtga atatcgaccc tgaagaaatt
6181 aagaatagta tcgcatatca gaagtatgaa atacagtgtt cggataaagc tagaaaactg
6241 ataaaacata aattacaaaa tgacctcaat ggtatattca ataatgttta actaaatttt
6301 gtttgctt
//
