LOCUS MN379639 6110 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg7_8, complete genome.
ACCESSION MN379639
VERSION MN379639.1
KEYWORDS .
SOURCE Chicken microvirus mg7_8
ORGANISM Chicken microvirus mg7_8
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 6110)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6110)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6110
/organism="Chicken microvirus mg7_8"
/mol_type="genomic DNA"
/isolate="mg7_8"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720930"
/country="USA"
/collection_date="2017"
CDS 1..2127
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82339.1"
/translation="MPNILKNPNYRARLGRHGHDLSRRLLFTSSVGQLLPVLNDFLLK
GDKVRLNESVFTRTQPLKTPAFVRCTEHIYYFFVPMKQMNAYWEQAYFGIQDIMNTND
IPLKYDGSGNGAQVPMVSAGGYFRLPLIDNSCISLQDLLRGLFGVFSRSSGTITDVNI
QSKFYIVGQTGNAGRFPVYAKNTAVSSSLDQYNIPMLWNAIRLLDLLGYGGRLYSSVD
GNVVKGDGSIGPLEDYTKNKLGGIFQVKVNLYSLAAYQKIFYDFFRLSKFTANSPYAY
NFSRYNSSVSTYDGRAILNYDLRYFNVDTTNDSYRYHGLFELHYHPFKKDFFTNIETT
PLFDLSGTGINSYTDGRNTVSNDELTPSLSDLASQVLSTYGVQRQNITETLTGRSNAN
VSSSGIETIAQGESPSVQQLRLAYAYDRLLAITQRGGRHVDDQYAAHFGSRPPQGVSD
EVYYLGSHSSPLKIGEVVATAAGSADSRNTSVLGELAGRGLGVSSKNKDITFTAPCHG
ILMAIYSCVPDIEYRDTGIDRKNFYTSINDYPHPEFDNLGMQPLFNVQSNIHLVGVNT
ANSIFGWQYRYSELKLAYDRICGAFNYTLIDWTSATYFGEDVATGGYLDIGDIFYVSP
NFLNRIMALDFNPPLVSADGINRVLLGYCRKSYGSATDTPNIKFYTLANDFFTDTVYE
RDPLLHSIDFKYYKTSCLSTYGLPNI"
CDS 2131..2538
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82338.1"
/translation="MNTLFVNKFYGIGRNIGKEEIPPANVVNTILCNFENDNPVFSQL
YKIAIESGSLPNDIDLSLSKSTPEEFRAVLASLQRKFPTAAAFSSDEDAFEFIASRYA
QFGNEVQPYLDAIEAQMKDIQVAQVQPSQPNPE"
CDS 2535..3776
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82337.1"
/translation="MIMDWKAIGQTAAQTGIGAITGGVGGALASGLSGLIGNIFGDKT
PSQKDIMEWQEKMLEKQFAFNKQEAALNRDFQKSMMEAAQQWNSIGSQMQRAQAAGVN
PFSLINNSGYQSVGSSAMASGSQAAPASGMMPGQPSSLDAQRFNLIAAAMQSISNSSL
SQSKKNEIDTKLAAELRKTIAEADINEAEAKIKQLVANDPRLSDFVTAFFVKAREEAE
TAAARTDYIKDMSDLVKQDKNLKFLQGKIKKDHWEIVQPLLGDYYQGVIDKNTAETGL
AKARTTTESYVQAELWSRKQLNDITAQVQDTIKQLNDFVIDINKATNDDKKAFVKKHY
QELRNRESELTDLLREQLELAKKNNDTYMVRVITDCLTDLISVGADVYAKTRKNRGYI
EESETSHYGRDTYSTRRITPI"
CDS 4666..6108
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82340.1"
/translation="MCTNIKPVRNPYTGKIIYAKCGECPSCQLDRAKRQLVRLVNTNM
KDRFNLFFSLTYDNAHVPYVKLADLDFGVEVPVYRQCDSKYVQPKGFTSPYLRHKFGE
FQIDAFILTSKADYRRLKLTKSLPNPVDMKLGEVVAVCCNQDFTRFVKRFCVNFYRAT
GKKIQSADLSFGYYRVSEYGPTTFRPHFHVLFTFSSDLRPYYEQIKAAIVKSWPMCNP
DEFSNKDHGIQEAISPNDYISKYTCRPADMPKALQVAHIRPRPSFSTFIGRDNVQFNG
DHFLACIANKAMEYVAPKRLTSGCSVLVNLCLPRYVTRWFIPAIKSAYKFTDGEIERV
CYDPRSCLSLLLSKGYTYDDYKSLVNNIDIRKARIRLSDDMFAQMVVEFRRITRSHVM
ASQFNDDQMLYPDLYYDNLFDSHDERRLPLMRQGYKNINETPNRMAIEQPKIDEYNAN
QKQRKIFSIFSSRRAIQNIRHQQWFNYKFE"
ORIGIN
1 atgcctaata ttttaaaaaa tccaaactat cgtgcccgtc ttggacgaca tggacacgat
61 ttaagccgcc gattattgtt tacctcatcg gtcggtcagc ttttgcctgt cctcaatgac
121 tttctcctta aaggagataa agttcgtttg aatgaaagtg tctttactcg tacacaacct
181 ttgaagactc ctgcttttgt tcgttgtact gaacatatct actacttctt cgttccaatg
241 aagcaaatga atgcctattg ggaacaggca tattttggta ttcaggatat aatgaatacg
301 aatgacattc cactgaaata cgacggtagt ggtaatggag cccaagtccc tatggtttct
361 gctggtggct atttccgttt gccgcttatt gataattctt gcatatcatt gcaagactta
421 cttcgtggtc tctttggtgt gtttagtcgt agttctggta ccattaccga tgttaatata
481 caaagtaaat tttatattgt tggtcaaact ggtaatgctg gccgtttccc tgtttatgct
541 aagaatactg cagtgtcttc ttctctagac cagtataaca taccaatgct ttggaatgcc
601 attcgcctgc ttgacctttt aggctatggc ggccgtcttt acagttctgt tgatggcaat
661 gtggttaaag gagatggcag tataggtccc ttggaagatt atactaaaaa taaactagga
721 ggtatattcc aagttaaggt taatctatat tcgcttgctg cgtaccagaa gattttctat
781 gatttcttcc gtcttagtaa gtttactgct aatagtcctt atgcgtataa tttcagtcga
841 tataattcat ctgtatctac ttatgatggt cgtgctatct tgaattatga tttacgttat
901 tttaatgtag atactactaa tgactcatat cgttaccatg gtctatttga attgcattat
961 cacccgttca aaaaggattt tttcacaaat atagagacaa ctcctttgtt tgatttgtca
1021 ggtaccggga ttaattctta tacagacggt cgcaatactg tttctaacga cgagttaacg
1081 ccatctttgt ctgaccttgc ttcacaggtt ttgtctactt atggtgttca gcgtcagaat
1141 ataacagaga ctcttacagg ccgttctaat gctaacgttt catcaagtgg tattgaaact
1201 attgctcaag gtgaatcacc gtccgttcag caacttcgtc ttgcttatgc atatgatcgt
1261 cttttggcta taacgcaacg tggaggtcgt catgtagatg atcagtatgc tgcgcatttt
1321 ggttcacgtc ctccccaggg tgtatcagat gaagtttact atcttggcag tcattcatca
1381 cctttgaaga taggtgaagt tgttgcaact gctgctggct ctgctgactc tcgtaatacg
1441 tctgttcttg gtgaacttgc tggtcgcggt cttggtgtgt cttcgaagaa taaggatatt
1501 acttttacag caccctgtca tggtatattg atggctatat actcatgcgt gcctgatata
1561 gagtatcgtg atacaggtat tgatcgcaag aacttctata cgtctattaa tgactatcca
1621 caccctgaat ttgacaattt aggaatgcag ccgctgttca atgttcagag taatattcat
1681 cttgtaggtg ttaatactgc caatagtata ttcggttggc aatatcgtta cagtgaattg
1741 aaacttgcat atgatcgtat ctgtggtgcc ttcaattata cccttataga ttggacttct
1801 gctacatatt tcggcgaaga tgttgctact ggtggctatc ttgatattgg tgatatattc
1861 tatgtatctc ctaacttttt gaataggata atggccttgg actttaatcc gccattagta
1921 tctgctgatg gtattaatcg tgttttgcta ggttattgtc gtaaatctta tggttcggct
1981 acggatactc ccaatattaa attttacact ttggctaatg atttcttcac ggatacagtc
2041 tacgaacgtg atcctctctt acattcaatt gatttcaagt attacaagac ttcatgtctt
2101 tcaacttatg gtcttccaaa catttaagct atgaatactt tgtttgttaa taaattctac
2161 ggcattggcc gtaacattgg taaggaggaa atacctcctg ccaatgttgt aaatacaatt
2221 ttgtgtaact ttgagaatga caacccagta ttctcccagt tgtataagat agcgattgag
2281 tctggttctc ttccgaatga tatagatttg tctctgtcta agtcaacacc tgaagagttt
2341 cgtgctgtct tggcttcttt gcaacgtaag ttccccactg ctgctgcttt ttcttctgat
2401 gaagatgcct ttgaattcat tgcatctcgt tatgctcaat ttggtaatga ggttcagcct
2461 tatcttgatg ctattgaagc tcaaatgaaa gatatacaag tagctcaagt tcaaccatct
2521 caacctaacc ctgaatgatt atggattgga aagcaattgg acaaactgct gctcaaacag
2581 gcataggtgc catcactggt ggagttggtg gcgcccttgc ttctggtctt tctggtctta
2641 ttggtaatat ctttggagac aagacaccat cccagaaaga catcatggaa tggcaagaaa
2701 agatgctcga gaaacagttt gcatttaata agcaggaagc tgctcttaat cgagattttc
2761 aaaagtctat gatggaggct gctcaacagt ggaattctat tggctcccag atgcagcgtg
2821 cgcaggccgc tggagttaat ccttttagtc ttataaacaa tagcggttat caatctgtcg
2881 gctcttctgc tatggcttcg ggttcccaag cagctcctgc ttcaggaatg atgcctggtc
2941 aaccctcgtc tcttgatgct caaaggttca accttatagc cgctgccatg caatctatca
3001 gtaattcttc acttagtcag tctaagaaga atgaaataga cactaagtta gctgctgaat
3061 tgcgtaagac tattgctgaa gctgatataa atgaagctga agccaagata aagcaattgg
3121 ttgctaatga tccccgtctg tctgatttcg tcactgcatt ttttgtcaag gctcgtgaag
3181 aggctgagac tgctgctgct cgaacagact acattaagga tatgtctgac ctcgtcaagc
3241 aggataaaaa tctcaagttc cttcaaggta agattaagaa agatcattgg gaaattgtcc
3301 agcctttgct gggcgattat taccaaggtg ttatcgacaa gaataccgct gaaacaggtc
3361 tggcgaaagc acgtacaaca actgaaagct atgttcaggc tgaactctgg tcgcgcaagc
3421 agcttaatga tatcactgcc caagttcaag ataccatcaa gcagcttaat gactttgtta
3481 ttgatatcaa caaggctact aacgatgata agaaggcatt cgttaagaaa cattatcaag
3541 agcttcgtaa ccgagagtct gagcttactg atttgttgcg agaacagctt gagttggcca
3601 agaagaacaa cgacacttat atggttcgtg ttatcactga ctgtctaaca gatctcatat
3661 ctgttggtgc tgatgtatac gctaagacac gtaagaaccg cggttatatc gaagagagtg
3721 agacatcaca ttacggccgt gatacatata gtactcgtcg tataactcct atttagtgtt
3781 aaatttattt aatttatttg attgtataaa attaattgct atctttgcat tgttaaacaa
3841 aaaaaatatt gttatggtta cagttattag aaaagttgag gcttatacgc ctcttgaaca
3901 atcaattaca gtttatcttg ttaatttatc gcttaatcct cagacaccgc cccgagaggt
3961 ggctttctcc accctctctg aagccaccca gttcattcag gatattaacg gttttcctga
4021 caagtacttg aaaggtttgt ttgattaaag ggttgttcga cattctttga gtaacaccca
4081 gcgaagcggc cgaagcgaag cgattcctcg gccgctgcta atttatgcct gagcttgctc
4141 agagcgaggt gacgagcgtg catatgcgac tagcataaac gtcccaaccg ctcgcagact
4201 agcgtaagcg tatgtctgca aaggcaagtg aaacgccgcc gcccatatta gactaaatga
4261 taacacccac ggatgtgaag tggcgattta accttaccat cgccaaacct gctcttgacc
4321 ctcatatttt gtcgtacaca gcttaaaatt gtacgacact ttccaacaaa tcaccaaata
4381 gcttgtcttt tgcgtgattt caatcgattt tatatcgaaa aatttttttt atcaatttat
4441 tttattatat ttgcccaaaa ttaattatat gagtaaagaa attattaaaa tcattttgaa
4501 agtcatagcc tatgccatta ctttaatttt aggctatctt ggcgtaaacg ctatggtttc
4561 atgtactgtc catcatgctt tagatgctaa aggacgtaca attatagtta caagtgatac
4621 gactgtcata aatcatgacg gttatatgaa atatcctaga tagatatgtg tacaaacatt
4681 aaacctgtcc gtaatccata cactggcaag attatatacg ctaagtgtgg tgaatgtccc
4741 tcatgtcaac ttgacagggc aaagcgtcag cttgttcgcc ttgttaacac taacatgaaa
4801 gacaggttta atttgttctt ctctctcaca tacgacaatg ctcatgtgcc ttatgtcaag
4861 cttgccgacc ttgattttgg tgttgaagtt cctgtttatc gtcaatgtga tagcaagtat
4921 gtacaaccta aaggttttac ttctccctat cttcgtcata aatttggcga atttcaaatt
4981 gacgctttta ttttgacttc aaaagctgat tatcgtcgtt tgaagcttac taagtccttg
5041 cctaaccctg ttgacatgaa actaggagaa gttgttgccg tatgttgtaa tcaagatttt
5101 actaggtttg ttaaacgttt ttgtgttaat ttttatcgtg ctacaggaaa aaagatacag
5161 tctgctgatc tttcattcgg atattatcga gttagcgagt atggaccgac cactttccgc
5221 ccgcattttc acgtactctt tacgttctcc tcggacctta gaccatatta cgagcaaatc
5281 aaagctgcca ttgttaagag ttggccgatg tgtaatcctg atgaattttc caacaaagac
5341 catggaattc aagaagcgat tagtccgaat gattacattt cgaagtacac ttgccgccct
5401 gctgatatgc ccaaagcttt gcaagttgca catattagac cgcgcccctc gtttagtaca
5461 tttattggcc gtgataatgt gcagtttaat ggcgatcatt tccttgcctg tatcgccaac
5521 aaggctatgg aatatgttgc tccgaaacgt ctcacatctg gatgcagtgt cctcgttaat
5581 ttatgtcttc cccgctacgt tacacgttgg ttcattccag caattaagtc ggcttataag
5641 ttcactgatg gggagattga gagagtatgc tacgatcctc gaagttgttt gtcattactc
5701 ttgtccaaag gatatactta cgacgactat aagtcattag ttaataatat agacattcgt
5761 aaggctcgta tacgtttgtc tgatgatatg tttgcgcaga tggttgttga atttcgtcgt
5821 ataacacgtt cacatgttat ggcttcgcag ttcaatgatg atcagatgct gtatccagat
5881 ctttattatg ataatctatt cgacagtcat gatgaacgtc gtttaccttt gatgcgacaa
5941 ggctataaga atattaatga aactccgaat agaatggcca ttgagcagcc taagattgat
6001 gaatacaatg ctaatcagaa gcagcgtaaa attttttcta ttttctcgtc tcgccgtgct
6061 atccaaaata taagacatca acaatggttt aactataaat ttgaataatt
//
