LOCUS MN379640 5777 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg7_10, complete genome.
ACCESSION MN379640
VERSION MN379640.1
KEYWORDS .
SOURCE Chicken microvirus mg7_10
ORGANISM Chicken microvirus mg7_10
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 5777)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5777)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5777
/organism="Chicken microvirus mg7_10"
/mol_type="genomic DNA"
/isolate="mg7_10"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720922"
/country="USA"
/collection_date="2017"
CDS join(5297..5777,1..20)
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82342.1"
/translation="MAIKVKIYLPYGPKRPAKASCAGNRTEPHYVERYTETGHPYLVK
DGETDVYAIIQSHKEECDINLMLQRYAAGDTSVMRNDARYIDTSNIPTSIHEMFNYMN
SQREKFDALPVTIKQKFDNSFEVWASTSGTADWIEKMGLNEKPKVNLKKEETKKEETK
NGEQKQ"
CDS 1..1686
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82343.1"
/translation="MANRNSESRFAQVPRAEIRRARFKRDFSNITTINEGDLVPLYVD
EVLPGDTISCDMNGLIRMSTPLYPVMDNCYLDTYAFFVPCRLLWEHWENLMGQNDSTY
WAEKTEYSVPQTTAPSGGWNVGTIADYMGIPTQVANLKVNSMPFRAYARIWNEWFRDE
NLQQPVVQDIDDANNTGSNTGTELTDAQNGGLPLKVAKYHDYFTSCLPEPQKGEAATI
PVDLSGTFPVNAGAMRTASTEPLYFAEPNQNTIYNPNNGRGMVLGITAQTAGPAGATE
ASVSSEFVNPGNPFIGTNLAPLNLQANINGVGAQITINELRQAIALQHILEADARGGT
RYVELLAHEFGVTSPDSRLQRSEYLGGTRVPININQVIQQSATTDASPQGNTAAYSMT
TLRNKMCNYSAVEHGYLVILGAIRVDHSYQQGLSRMWTRKGRFDFYHPMLANLSEMAV
LNKEIYAQGTAQDDEVFGYQEAWADYRYHPNIVTGEMRSTYAQTLDAWHYGDHYDKLP
TLSSTWIQEGTENIDRTLAVQSENSHQFICDFFFDQTWTRPMPIYSIPGLNTI"
CDS 1778..2695
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82341.1"
/translation="MAISPALIQAGVQLFSAIAPTLIQSFMGHSGTGSQSGNNTTTQS
SSQTTQGSMSQSGESSGTSGQMGSVGSIGSLLGQALGTATGSNWQQAFQASQGSATTA
NNMQTAQWGIASGLNMLSNLSANFGNLLSSNSAKSYNSKEAALQREWQEKMRGTAYQA
TMADMKAAGLNPILAAFNGATSAGSGAAASTGMQSYSHTQAAAIPSAHAASAQAMYDY
GNNTMQFLNNAMQTINTAKQFGWNQVASSLTQSTFNVADASAKSMNEYANQTAQQAQK
HLGQQGASNNDKYQMGGGYSHGAGAGRGR"
CDS 2787..3953
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82346.1"
/translation="MCYAPNVMIGRSFKGGLKKYCKENDVTNEQLTGMLKSGLAKIIP
CGQCLECRLNYAKNWAARCEVESYYYQNNHFITLTYDDDHVPVINKITGEIYRGLKHP
LDYYNYNKHYEVLNLWKKDFQDFMKRLRDYAQRHDLIEDKELGIRYFYCGEYGTGKHR
PHYHAIIYGLKLPDLKFHYMKKGYYHFTSEIIAKCWGNGLVDIGGVDYKSCQYVARYI
VKKQKGKDGKEWYRENALNPEFINMSLKPSIGLRYYEEHREDIYSKDLIYLKEGRKQK
PCKLYDLKEDEYQCMKEFGLTDEEMGIYHEDQRRIQAYNRQQKRDCEKIPVPKMESTV
MKELKRERRTKAMDALWAKLEKTALGVLEYLDVQKDKYEQQHKIAIDRPCKEEV"
CDS 4388..4873
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="peptidase"
/protein_id="QIR82345.1"
/translation="MKSWNCSRTSWRFWTNSIMQPLGRKTTMPQTVNETEDILICSRM
EEALSEHFHVREFACRDGCKFVLISKVLVRVLESLRQKIGEEIYINSGFRTPKHNEAV
GGELLSYHQYGMAADIRAKTKSPKELYDILDEMLEGWGGLELHKTFVHVDTRLKQWRK
K"
CDS 5059..5307
/note="Simialr to PHA00198"
/codon_start=1
/transl_table=11
/product="nonstructural protein"
/protein_id="QIR82344.1"
/translation="MELGIFAIKDELAEMWGNPFILPLKVSKRNFDFMAKERSEAECK
DQVIYLLGQYDNQTGTITLCKAEPVYNLDKEWMIKHGN"
ORIGIN
1 atggcgaaca gaaacagtga aagccggttt gcgcaggtac cccgcgcaga aatccggcgg
61 gcacggttta agcgggactt ttccaacatc accaccatca atgaaggcga tctggtaccg
121 ctgtacgttg atgaggtact gccgggcgac actatcagct gtgacatgaa cgggcttatc
181 cgtatgagta cgcctctgta tcccgtgatg gacaactgct atctggacac ctacgcattt
241 tttgtgccgt gtcggctttt gtgggagcac tgggaaaacc tcatgggcca gaatgatagc
301 acatactggg ccgaaaagac cgaatacagc gtaccgcaga ctaccgcacc ttctggcggc
361 tggaacgtgg gcaccatcgc cgactatatg ggcattccta ctcaggttgc aaacctcaaa
421 gtgaacagta tgcctttccg ggcctatgct cgaatctgga acgagtggtt cagagacgaa
481 aacctgcaac agcctgtcgt gcaggatatc gatgatgcca acaacaccgg aagcaacacc
541 gggactgaac tcaccgatgc acagaacggc ggcttgcctt tgaaggtagc caaataccac
601 gactacttca ccagttgtct gccggagccg cagaagggcg aggcagcgac aattcccgta
661 gatctaagcg gaaccttccc ggtaaacgcg ggagctatga gaacagcatc cactgaaccg
721 ctgtactttg cagagccgaa ccagaatacc atctataacc cgaacaacgg gcgcggaatg
781 gtactgggca tcacagctca aaccgcaggc cctgcgggtg caaccgaagc aagtgtaagc
841 agcgaattcg taaatcccgg aaatcctttc attggaacca accttgcacc tctcaacctt
901 caggccaaca tcaacggcgt gggagcacaa atcaccatca acgagctgcg acaggcaatc
961 gcattgcagc acattctgga agcagatgca cgaggcggca cccggtatgt ggagctgctg
1021 gcacacgagt ttggtgtaac cagtcctgac agccgtttgc agaggtctga gtatctggga
1081 ggcacccgag tgcctatcaa catcaatcag gtcattcagc agagcgcaac cacggacgca
1141 agcccgcagg gcaacacggc ggcctactct atgaccacgc tgcggaacaa gatgtgcaac
1201 tactctgcgg tcgagcacgg ctatctggtc attctgggag caatccgagt tgatcacagc
1261 taccagcagg gactgtcccg gatgtggacg cgcaagggcc ggtttgactt ctatcatccg
1321 atgcttgcaa acctgtcgga aatggcagtc ctgaataaag agatttacgc acagggcacg
1381 gcacaggacg atgaagtgtt cggttaccaa gaggcgtggg ccgactatcg ctaccatccg
1441 aacattgtaa cgggtgagat gcggagcacc tacgcacaga cgctggatgc atggcactac
1501 ggcgaccatt acgataagct gcctaccctg tccagcacat ggattcagga aggaacagaa
1561 aacattgacc gtactctggc agtgcagagc gagaactctc accagtttat ctgcgacttc
1621 ttctttgacc agacttggac acggcctatg cctatctaca gtattccggg cctcaacact
1681 atctaagaca tcatctagta ttcatattat acctcctttc ggaaggctcg gccttgacgg
1741 gccgggcctt tctagggtat aatgggaagg agacactatg gcaattagtc cggcacttat
1801 tcaagcagga gtacaactgt tcagcgcaat cgcaccaact ctgattcaat cctttatggg
1861 acacagcgga accggaagcc agagcggaaa caacacaaca acacagagca gcagccagac
1921 aacccaaggc agcatgagcc aaagcggcga aagcagcggc acaagcggcc aaatgggcag
1981 cgtgggaagc atcggaagcc tgcttgggca ggcactgggc accgcaacag gctccaactg
2041 gcagcaagcg tttcaagcat cgcaaggaag cgcaacaaca gccaacaata tgcaaacagc
2101 acaatggggc attgcaagcg gtctcaatat gctgtccaac ctgtcggcaa acttcgggaa
2161 cctgctgtcc agcaacagcg caaagagcta caacagcaag gaagcggcac tgcaaagaga
2221 gtggcaggag aaaatgcggg gaacggcata tcaagcaacc atggccgata tgaaggccgc
2281 aggactcaat ccgattctgg cagccttcaa cggagcaacc agcgcaggaa gcggagcagc
2341 tgcaagtact ggaatgcaga gctacagcca cacacaggca gcagctattc catcggcaca
2401 cgcggcaagc gcacaggcaa tgtacgacta cgggaacaac acaatgcagt tcctgaacaa
2461 tgctatgcag acgatcaaca cagctaagca attcggctgg aatcaggttg caagcagtct
2521 aacacagagc accttcaacg tagcagacgc aagcgccaaa agtatgaacg aatacgcaaa
2581 ccagaccgca caacaggcac agaagcacct cgggcagcag ggagctagta ataatgataa
2641 gtaccaaatg ggcggcggct attcccatgg agcaggagct ggaagaggaa gataaggcct
2701 cgtaacctgt cacctaggcc agtaggacaa caagtatgtc ctactggcct atcgagaggc
2761 tacgagcctc acgggaggta ttctaaatgt gttacgcacc taatgttatg attggccgca
2821 gtttcaaagg cggcctaaag aagtactgta aagagaatga cgtcacaaac gaacaattga
2881 ccgggatgct taagagcggc cttgccaaga tcataccgtg tggtcagtgt ttggaatgcc
2941 ggctgaacta tgcaaagaac tgggcggcac gctgcgaggt cgagagctac tactaccaga
3001 ataaccactt cattacactg acttatgatg atgatcatgt gccggtgatc aataagataa
3061 ccggagagat ttacagaggt ctgaaacatc cgttagacta ctataactat aacaaacatt
3121 acgaagtact gaatctttgg aagaaggatt tccaagactt catgaaaaga ttaagagact
3181 atgcacagcg gcatgacctc atagaggaca aggagctggg catccgatac ttctactgcg
3241 gggagtacgg cacaggaaag cacaggccgc actaccatgc aatcatctac gggctgaaac
3301 tgcctgacct taaattccac tacatgaaga agggatatta ccacttcaca agcgaaatca
3361 tagcgaaatg ctggggaaat ggtctggtag atataggcgg tgtagactat aagagttgcc
3421 agtatgttgc gcgatacatc gtcaaaaaac agaagggcaa agacgggaaa gagtggtaca
3481 gagaaaacgc tctgaaccct gagttcatca atatgagcct gaaaccttcc attggactgc
3541 ggtactatga ggaacacagg gaggacattt acagcaaaga cctgatctac ctgaaggaag
3601 gtcgcaaaca gaagccctgc aaactgtacg acctgaaaga agatgagtac cagtgcatga
3661 aagaatttgg tctgacagat gaggaaatgg gcatctacca cgaagatcag agaaggatac
3721 aggcatacaa cagacagcag aaaagggact gtgagaaaat tccagtgccg aagatggaaa
3781 gcacagtaat gaaagagctg aaacgagagc ggagaacaaa ggctatggat gcactttggg
3841 caaagctcga aaaaacagcc ttgggcgtac tggaatactt agacgtccaa aaagacaaat
3901 acgaacagca acacaaaata gcgattgacc gcccttgtaa agaggaggtc tagatgctga
3961 ataaagggaa caaacgcacg gaggccggga ggctgggcgg cctaccgtct ctttgattta
4021 aaattgcccg ctggcgcggg cttttgaagg aatcgccggg tttcggcctt gctctacctg
4081 tacgcacctt gagaattgaa gaaagttttc aacaatgttt cctgaaaatc actgttgact
4141 gttgattatt ttctggtata atagaatcag aaaaggaggt aacgaaaatg atcaaaaccg
4201 aagtcaccgt aaaagtctac gacagcgagg aagcatcata cgaaatcaga aatctgaaaa
4261 aactgggata ccagagaacc caaaatgcgt tttgggtcga atggtgggaa aaagaaacca
4321 accgcgtaat cctggtaaga gacttctgaa aaaaacatcc ggaaaggagg tgaagaaatg
4381 accataaatg aaatcgtgga actgctcaag aacatcttgg aggttctgga caaactctat
4441 catgcaacca ttggggagga agacgacaat gccgcagaca gtgaatgaaa cagaagatat
4501 tctgatttgc agtcgaatgg aagaagctct cagcgaacac tttcacgtcc gagaatttgc
4561 ttgcagagat ggatgcaaat tcgtattaat cagtaaagtc ctagtccgag ttctagagag
4621 cctgcggcaa aaaatcggag aggaaatcta catcaacagc ggtttccgaa cacctaaaca
4681 caacgaagcc gtaggcggag aactcctgtc gtaccatcaa tacggcatgg cggcagacat
4741 tcgggccaaa accaaaagcc cgaaagaact gtacgacata ctggacgaga tgttagaagg
4801 ctggggcggc ctagaacttc acaaaacttt cgtccatgta gacacccgat taaaacaatg
4861 gaggaagaag taatgtcatc atgcaaggcg agagactcac ccaaaagaaa ggagaaaaac
4921 catggcacac cgtatgaccg taaaacctaa gaccgaccgg aagatcttca ccaacacggc
4981 caaaaagact aaggctgtga acgtaaagcc gaagaacagc cggggcggca tccgctttta
5041 aggaaaggag aaccaaaaat ggaactaggt attttcgcaa tcaaagacga gctggccgag
5101 atgtggggca atccgttcat cttgccgctc aaggtgagca agcgcaactt tgacttcatg
5161 gcaaaggagc ggagcgaggc cgaatgcaaa gaccaggtta tctacctgct gggccagtac
5221 gacaaccaga ccggaaccat tacgctgtgc aaggcagagc cggtctataa cctcgacaag
5281 gagtggatga tcaagcatgg caattaaggt aaaaatctac ctgccgtatg ggccgaagcg
5341 accggcaaag gccagctgcg cagggaaccg gactgaaccg cactatgtgg agcggtacac
5401 agagaccgga cacccgtatc tggtaaagga tggtgagaca gacgtctatg ccatcatcca
5461 gagccacaag gaggaatgtg atatcaacct catgttgcag aggtacgcag caggtgacac
5521 cagcgtcatg aggaacgatg cacgctacat cgacaccagc aacattccta ccagtatcca
5581 cgaaatgttc aactacatga acagccagcg ggaaaaattc gatgcactgc cggtgaccat
5641 caagcagaag tttgacaaca gcttcgaggt ctgggccagt accagcggca cagcggactg
5701 gatcgagaaa atggggctga acgagaagcc caaagtcaat ttgaagaagg aggaaacgaa
5761 gaaggaggaa accaaga
//
