LOCUS MN379641 5037 bp DNA circular PHG 04-APR-2020
DEFINITION Chicken microvirus mg7_14, complete genome.
ACCESSION MN379641
VERSION MN379641.1
KEYWORDS .
SOURCE Chicken microvirus mg7_14
ORGANISM Chicken microvirus mg7_14
Viruses; Monodnaviria; Sangervirae; Phixviricota;
Malgrandaviricetes; Petitvirales; Microviridae; Microvirus.
REFERENCE 1 (bases 1 to 5037)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5037)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (26-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5037
/organism="Chicken microvirus mg7_14"
/mol_type="genomic DNA"
/isolate="mg7_14"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720923"
/country="USA"
/collection_date="2017"
CDS 1..1614
/note="similar to PHA00363"
/codon_start=1
/transl_table=11
/product="major capsid protein"
/protein_id="QIR82353.1"
/translation="MSKVRPRSKYRKDVNRFASIPSINIKRSVLPRSFEYKTTFDAGY
LIPFYCKEVLPADTVKLSLSSLLRLTTPKVPFMDGLYVSFQFFFVPNRLVWDHWVNMM
GERKNPEDSIDFLTPTIDITNAQNGTLTDYFGLPTNVTGTYKVSALPFRAYNLIFNEW
YRDQNLQDSLPVPTGDGPDKMSDYKLMRRAKYHDYFTSALPAPQKGPASSISLTGEAP
VMSNGPLKFDVGSRSSTYVPGQVFSDQKSGTVSSGSLHVATSSGPASDSIYPVSLGSD
TSLYADLTNVGDFTINDLRQAWQIQKLLETDMRSGTRYTEVLRAHFSVLSPDARLQRP
EYLGGFTRPIAVSPVVQTSSTDTTSPQGNLAALSATFASGRGFTKSFVEHGWIIGLMS
VRSDISYQQGVHRQWTRQGRYDYYWPVFAHLGEQPVLNKEIFVQGTAEDDEPFGYQER
YAEYRYDQNMITGKLRSTDPQSLDMWHLSQEFENLPTLSEQFIQENPPLKRVLAVTSE
PQFIGVISVNSQWTRAMPVYGVPGLVDHF"
CDS 1672..1941
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82351.1"
/translation="MYIARIIDDYSKFTTWCYSGFCPFAKDSAELDEFSSIIDFDENS
RTLKRRVHKHWHGYFAKVLIFRETTLVSWRDMAFGKRWSKWFISK"
CDS 1949..2569
/note="similar to PHA00327"
/codon_start=1
/transl_table=11
/product="DNA pilot protein"
/protein_id="QIR82349.1"
/translation="MWGPIIAAGISAAGSYLGAQKQASAANAANDKQIAWQREAMQNR
HQWEVQDLRKAGLNPILSANAGASTGGAGFHPSVPDYMSAYQNLVGNAVNALKGLAEI
ENTEQNTRVAYATEKRIDAETHNLGLTGARLGMDLKRDQENPLSYEVGSRSGWPAQFL
QGLQSTWNRLGNWYNNFKNSPRPSRPSRTYRTSPRNYRFVFGSYWR"
CDS 2388..2672
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="QIR82350.1"
/translation="MKSVPVPVGLLSFCKVSSLLGIVLVIGTITLKIVLDRLDRLERI
GQVLVTIALFLVRIGGNVVNKFLELFSVLVTAGEALYRAFRNLKKFFKGE"
CDS 2927..3844
/note="similar to PHA00330"
/codon_start=1
/transl_table=11
/product="replication initiator protein"
/protein_id="QIR82348.1"
/translation="MPCSNLQIYWLGKNGQMVFKRSESIAPWAPRLKPCGKCLGCKLD
YARMWALRGILELQLHTKSCFITLTYDNEHLPPAKSLHKPDVQKFWKSLRKKIAPVKL
RYLECGEYGEKNGRPHYHAIVFGWQPNDLVYHSTRRGIPNYTSATVFDCWKRGHIVVG
AVSYNSIAYVARYILKKQVGVGAEEFYGVRRPEYFHMSNKPGIAHDWIAKYNSSVYPE
DKVYFFKKGKLTYQKPPRYFDKYMEEVYYDMIYEVKEKRQAKAPSLDEWAKLFADRLR
LGKVQEYRQSRISRPIEEGDYESPSVCDF"
CDS 3816..4154
/note="Simialr to PHA00198"
/codon_start=1
/transl_table=11
/product="nonstructural protein"
/protein_id="QIR82347.1"
/translation="MKVQAFAIFDIASETYSAPFFRNTVALAKRDFAEMISQPGLVGK
YPEDFFLDRLFSIELDTGEILDSDKFRVVRASDLLSSRTKPTSQSVLEESERSEIRRQ
LVEDNSSAQF"
CDS 4241..4723
/note="similar to PHA00099"
/codon_start=1
/transl_table=11
/product="internal scaffolding protein"
/protein_id="QIR82352.1"
/translation="MKVKINSIYSERVRSSLRFTQPSKVQKQFAEQCSTEHIVEKFLR
GEPVATASKPAVYADLTQVPDFDGLQNRLAVLNNWFSDLPAEVRSEFDNDPQKALEEL
TKPDRMSDAVELGLLDPSVLETDAGVSEEPVDEGKAEEVSSSEGATQDNQPPKNAIHS
"
ORIGIN
1 atgtctaagg ttcgtcctcg ttctaagtac cgcaaagacg ttaatcgttt tgcttctatc
61 ccgtcaatta atattaaacg ttctgtccta cctcgttctt tcgagtacaa gacgactttt
121 gatgctggtt atttgattcc gttctattgc aaggaagttt tgcctgcgga cacggtgaag
181 ctgtcgcttt cgtctctttt gcgtttgact acacctaaag tgccctttat ggacggtctt
241 tatgtttcct tccagttttt ctttgttcca aaccgtttgg tttgggacca ctgggtgaac
301 atgatgggtg aacgtaaaaa tcccgaggat tctattgact tcctcacccc gacaattgac
361 attacgaatg cccaaaatgg tactttaacc gactattttg gccttcccac gaatgttact
421 ggcacgtata aagtatctgc cttgccgttc cgtgcgtaca atttgatttt caatgaatgg
481 tatcgcgatc aaaacttgca ggatagtttg cccgttccta ctggtgacgg tccggacaaa
541 atgtcggatt acaaattaat gcgtcgcgcg aagtatcacg attatttcac gtctgctttg
601 cctgctccgc aaaaaggacc ggcttcttca atttctttaa ctggtgaagc tcctgttatg
661 tctaatggcc cgcttaaatt tgatgtcggt tctcgttctt ctacctatgt tccgggtcaa
721 gttttttcag accaaaaatc tggtactgtt tctagtggtt cgcttcatgt tgctacttct
781 agtggtcctg cttctgattc tatttaccct gtttctctcg gttctgatac ttcactttat
841 gccgatttga cgaatgtcgg cgatttcacg attaatgatc tccgacaggc ttggcagatt
901 caaaagctcc tagagaccga tatgcgttcc ggcactaggt acactgaggt tttgcgtgcg
961 cacttctctg tgttgtcgcc cgatgctcgt ctccagcgtc ccgagtacct cggaggtttc
1021 actcgtccga ttgctgtttc tccggtagtt caaacttctt cgacggatac tacttcgcct
1081 caaggtaacc ttgccgcatt gtcggctacg ttcgcttccg gtcgtggttt cacgaagtct
1141 ttcgttgaac acggttggat tatcggctta atgtctgtcc gttcggatat ttcttaccaa
1201 caaggtgtgc atcgtcaatg gacccgtcaa ggtcgttatg actactattg gccggtattt
1261 gcacacttag gcgaacaacc cgtgttgaat aaggaaattt tcgtacaagg tacggccgaa
1321 gatgatgagc cctttggtta tcaagagcgt tatgccgagt atcgctatga tcaaaacatg
1381 attaccggta agctccgttc cacggaccct caatctttgg atatgtggca tttgtcgcag
1441 gaatttgaaa atcttcctac tttgtccgag caattcatcc aagaaaatcc gccgttgaaa
1501 cgtgttttag ctgtaactag cgaaccccaa tttatcggtg tgatttcggt taattcccaa
1561 tggactcgcg caatgcccgt ttacggtgtg cccggtttgg ttgatcattt ctaatgttga
1621 ctaatgtatt ctagtggtgt acaatgtaat tatctttaaa aggaggttca tatgtacatc
1681 gctagaataa ttgacgatta ttcgaagttc actacttggt gttactctgg tttttgtccg
1741 tttgccaaag attctgctga attggatgag ttttcttcga ttattgattt tgatgaaaat
1801 tctcgtacgc ttaagcgtcg tgttcataag cattggcatg gttattttgc gaaagttttg
1861 atttttcgtg aaacgacttt agtttcttgg cgtgatatgg cttttggtaa acgttggtct
1921 aaatggttta tctctaagtg aggttattat gtggggtcct attattgctg ctggtatttc
1981 tgctgctggt tcttatcttg gtgcccaaaa acaagctagt gcggctaatg ctgctaatga
2041 taagcagatt gcttggcaac gtgaagccat gcagaatagg catcaatggg aagttcaaga
2101 tctgcgtaaa gctggtctca atcccatttt aagtgctaat gctggtgctt cgactggtgg
2161 tgctggtttt catccttctg tgcccgatta tatgtctgcg tatcaaaatc ttgtaggtaa
2221 tgccgtgaat gctttaaaag gtctcgctga aattgaaaat accgagcaaa atacacgtgt
2281 tgcctatgct actgaaaaac gtattgatgc tgaaactcac aatttaggtc ttactggtgc
2341 tcgattgggt atggacctta aacgtgatca ggaaaatccg ctttcatatg aagtcggttc
2401 ccgttccggt tggcctgctc agtttttgca aggtctccag tctacttgga atcgtcttgg
2461 taattggtac aataacttta aaaatagtcc tcgaccgtct agaccgtcta gaacgtatag
2521 gacaagtcct cgtaactatc gctttgtttt tggttcgtat tggaggtaac gtggtaaata
2581 aatttttgga gcttttttcg gtgttggtta cggctggtga agctctctat cgtgcttttc
2641 gtaacttaaa gaagtttttt aaaggagaat aaaaatgcgc cgccgccgtt tgtctcgccg
2701 agcttctcgc cgccgttttc gtgctggtgc ccgtgtaaat cgtaagaatt tgcgtgttcg
2761 tcctatgcgt ggaggttttc gattatgaga aggaaaagag gtcgctacac agcccgtttg
2821 aagcgtgcta tacttcgttc actgcgtcgt cgttcatatc gtcgtcgtcg gtaaagtact
2881 cctaaagtct tacgggcctt cttggcccgt tttttttggt ttgattatgc cttgttcaaa
2941 tctacaaatt tattggctag gaaaaaatgg ccagatggtt tttaagcgtt ccgaatccat
3001 tgccccttgg gcgccacgcc ttaaaccttg tggaaagtgt cttggttgca agctcgatta
3061 tgcccgtatg tgggcccttc gtggcatcct tgagcttcaa ttgcatacta agtcttgttt
3121 tataacattg acttatgata atgagcattt gcctcctgct aagtccttgc ataaacccga
3181 tgttcaaaaa ttttggaagt ctcttagaaa gaaaattgcg ccggttaagc tccgctacct
3241 ggagtgtggt gagtatggtg aaaagaatgg tcgtccgcat tatcatgcaa tcgtctttgg
3301 atggcaaccg aacgatttgg tttatcattc gactcgccgt ggtataccta attacacttc
3361 tgctactgta tttgactgtt ggaaacgagg ccatattgtt gttggtgctg tttcttataa
3421 ttctattgcc tatgttgctc gctatatttt gaaaaagcag gtcggtgttg gtgctgaaga
3481 gttttatggt gttcgccggc ctgagtattt tcacatgagt aacaaacccg gtattgctca
3541 cgattggatt gctaagtaca attcgagcgt ttatcccgag gataaagttt actttttcaa
3601 aaaaggtaaa ctcacctatc aaaaaccacc ccgttacttc gataagtaca tggaagaggt
3661 ttattatgat atgatttatg aagttaagga aaagcgccaa gctaaagcgc cttcccttga
3721 tgaatgggcg aaactttttg ccgatcggct tcgtctagga aaagtacaag agtatcggca
3781 atctcgtatt tctcgtccta ttgaggaagg tgactatgaa agtccaagcg tttgcgattt
3841 ttgatatcgc ttctgaaact tactccgctc catttttccg taacaccgtg gctcttgcca
3901 aacgtgattt cgctgagatg atatctcagc ccggtcttgt cggtaagtat cccgaagatt
3961 tcttcttaga tcgacttttt tctattgagt tggatacagg agaaatcctc gactcagaca
4021 aattccgtgt cgtgcgtgct tccgacctcc tttcttcgcg aacaaaaccc acgtcacaaa
4081 gtgtattgga ggaatccgag cgaagcgaaa tccggcgtca gcttgtggag gataattcaa
4141 gcgctcaatt ttaattgagc aagagagatt tagtcgatcg tggagccccc ttttaaaagg
4201 gggcggccat tgcttgcaat ggaccacgac agggggtttt atgaaagtga agatcaattc
4261 tatttactcg gaacgtgtcc gaagctcgtt gcgttttacg caacccagca aagtgcaaaa
4321 gcagttcgct gaacagtgtt ccaccgaaca cattgtggaa aaatttctgc gtggcgagcc
4381 tgtcgccact gcgtcaaaac ctgcggttta cgcagatttg acgcaagtcc ctgactttga
4441 tggtctacaa aatcgtttag ccgtgctaaa taactggttc tctgatttgc ctgccgaagt
4501 ccgttcagag ttcgacaacg atccacaaaa ggctttggaa gaattgacaa agccggatcg
4561 tatgtcggac gcggttgaat taggattgct agatccgagc gtactggaga cggacgcagg
4621 cgtttccgag gagcctgtcg acgaagggaa ggccgaggaa gtctccagta gtgaaggagc
4681 gacgcaagac aatcaaccgc ctaaaaacgc catccattca taaaagagga gcgagtgcca
4741 agcaccgaac caccaagtcg gtgttagccg aaagaagtac cgagtgccaa gtttgcagtc
4801 taagtcgtcc cctattggtc atatcgtatg cagtgagaaa aaaagtgtgt aaattttcta
4861 actcattgtt tttaaatggt ttttgcgggt gtcacccgcc gaaggcgccc tgcggaagca
4921 gggtagcgga ttcggggcca cttgatgtaa tatccgctag gtgacacccg ctttgatttt
4981 aaagggaaat ttgccatttt ccgatgtttc acgaaatttg tttcacggag tttaatt
//
